Parental gene:

ENSCPOG00000011784

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_3:16681744..16688563(-)


>ENSCPOG00000011784
CATTTACAGCAAAAGGATCTCAGAGTGAAGAACGTAAAGAAATTCAGATATATGAAGTTGATTTCCATGGAAACATCGTC
ATCCTCTGATGACAGTTGTGACAGCTTTGCTTCTGATAATTTTGCAAACACAAGACTGCAGGCAGCCCGAGAGGGCTGCA
GGACCCGCAGCCAGGGTAGACTCTCTGGCCCTCTCAGGGTGGCCATGAAGTTTCCAGTGCGAGTGCATAGCACCAGGGCG
ACAACCAACAAAAAGCCAGCACCCCCCAAACCTCCAGAGAATTCTGACATCATTTCCATCTCCGATTCAGAAGACGAAAG
TGGCGTGAACTTTCTGGAAAAAAGGGCCTTAAATATAAAGCAAAACAAAGCCATGCTTGCAAAACTCATGTCAGAATTAG
AAAGTTTTCCTGGCTCATTCTCTGGAAGACCATCTGTCCCGGGCCCCAGATCACTGTCGAAGACTCCCAGGAGGCGCACA
TTCCCACGAATGGCTGCCAGGAGGAACCCAGAGCGCAGAGCTCGGCCGCTTACCAGGTCCAGGTCTCGGATCCTGGGGTC
TCTGAGTGCTCTCCCCACTGAGGAGGAGGAAGAAGAGGAAGACGATAAGTACATGCTCGTGAGGAAAAGGAAGGCCTTGG
ATGCATTGTATTCACAGGACGATGACATGCCCAGAAGTCGCCGCCCGGGATCCATGACCCTTCCACATATAATTCGTCCA
GTAGAAGAAATCACAGAGGACGAGTTGGAGAACATCTGCAGCAACTCCCGAGAGAAGATCTATAACCGCTCGCTGGGTTC
TACTTGCCATCAGTGCCGTCAGAAAACTATTGATACCAAAACAAACTGCAGGAACCCAGACTGCTGGGGCATTCGTGGCC
AGTTCTGTGGCCCTTGCCTTCGGAATCGCTATGGGGAGGAGGTCAGGGATGCACTGCTGGACCCGGACTGGCACTGCCCA
CCTTGTCGGGGGATCTGTAACTGCAGTTTCTGTCGCCAGCGAGATGGACGGTGTGCAACTGGGGTCCTTGTGTATTTAGC
CAAATACCATGGCTTTGGGAATGTGCATGCTTACTTGAAGAGCCCCCACAGTCTGAAACAGGAGTTTGAAATGCAAGTA

Library Parental gene expression (RPM)
SRP017611_brain 0 .92 RPM
SRP017611_kidney 4 .92 RPM
SRP017611_liver 12 .14 RPM
SRP040447_lung 2 .14 RPM
SRP040447_skeletal_muscle 0 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007809 ortholog_many2many 1 retrogene
retro_cjac_4087,
Homo sapiens ENSG00000144354 ortholog_one2many 1 retrogene
retro_hsap_3438,
Mus musculus ENSMUSG00000055612 ortholog_one2many 2 retrogenes
retro_mmus_1493, retro_mmus_1494,
Nomascus leucogenys ENSNLEG00000005787 ortholog_one2many 1 retrogene
retro_nleu_2295,
Pan troglodytes ENSPTRG00000012645 ortholog_one2many 1 retrogene
retro_ptro_2331,
Ictidomys tridecemlineatus ENSSTOG00000009026 ortholog_one2many 1 retrogene
retro_itri_369,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_661 74.21 90.88
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2. retro_cpor_691 83.67 79.89
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Download FASTA sequences of all ENSCPOG00000011784 retrocopies