Parental gene:

PFDN4, ENSCPOG00000012478

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_96:2782702..2788059(-)


>ENSCPOG00000012478
AGATTCCTGACTGTGTATAGGCAAGCTGCAGAAGACGTCAATGTGACTTTCGAAGATCAACAAAAGATAAACAAATTTGC
ACGGAATACGAGTAGAATCACAGAGCTAAAGGAAGAAATAGAAGTAAAAAAGAAACAACTCCAGAATTTAGAAGATGCTT
GTGACGACATCATGCTCGCAGATGACGACTGCTTAATGATACCTTACCAAATCGGTGATGTTTTCATTAGCCATTCGCAA
GAAGAAACACAGGAAATGTTAGAAGAAGCAAAGAAAAATTTACAAGAAGAAATCGACGCCTTAGAATCCAGAGTAGCATC
AATTCAGCGGGTGCTAGCAGATTTGAAAGTTCAGTTATATGCGAAATTCGGCAGCAACATAAACCTTGAAGCTGATGAAA
GTTAA

Library Parental gene expression (RPM)
SRP017611_brain 4 .89 RPM
SRP017611_kidney 4 .71 RPM
SRP017611_liver 4 .61 RPM
SRP040447_lung 4 .69 RPM
SRP040447_skeletal_muscle 5 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013164 ortholog_one2one 2 retrogenes
retro_amel_1313, retro_amel_1469,
Bos taurus ENSBTAG00000008812 ortholog_one2many 1 retrogene
retro_btau_585,
Canis familiaris ENSCAFG00000011856 ortholog_one2many 1 retrogene
retro_cfam_60,
Callithrix jacchus ENSCJAG00000002615 ortholog_one2one 3 retrogenes
retro_cjac_1996, retro_cjac_2869, retro_cjac_4114,
Erinaceus europaeus ENSEEUG00000002733 ortholog_one2one 1 retrogene
retro_eeur_597,
Felis catus ENSFCAG00000013355 ortholog_one2one 2 retrogenes
retro_fcat_1031, retro_fcat_219,
Homo sapiens ENSG00000101132 ortholog_one2one 2 retrogenes
retro_hsap_3693, retro_hsap_4748,
Gorilla gorilla ENSGGOG00000027337 ortholog_one2one 2 retrogenes
retro_ggor_2497, retro_ggor_2950,
Myotis lucifugus ENSMLUG00000008582 ortholog_one2one 3 retrogenes
retro_mluc_1343, retro_mluc_510, retro_mluc_940,
Macaca mulatta ENSMMUG00000017300 ortholog_one2one 2 retrogenes
retro_mmul_1603, retro_mmul_2530,
Mustela putorius furo ENSMPUG00000006173 ortholog_one2one 2 retrogenes
retro_mputfur_664, retro_mputfur_791,
Mus musculus ENSMUSG00000052033 ortholog_one2one 1 retrogene
retro_mmus_2763,
Nomascus leucogenys ENSNLEG00000007023 ortholog_one2one 2 retrogenes
retro_nleu_1247, retro_nleu_2548,
Oryctolagus cuniculus ENSOCUG00000004940 ortholog_one2one 5 retrogenes
retro_ocun_1210, retro_ocun_1432, retro_ocun_1525, retro_ocun_287, retro_ocun_344,
Otolemur garnettii ENSOGAG00000016375 ortholog_one2one 1 retrogene
retro_ogar_2411,
Ochotona princeps ENSOPRG00000005385 ortholog_one2one 5 retrogenes
retro_opri_1006, retro_opri_211, retro_opri_396, retro_opri_425, retro_opri_866,
Oryzias latipes ENSORLG00000019179 ortholog_one2one 1 retrogene
retro_olat_25,
Pongo abelii ENSPPYG00000025840 ortholog_one2many 1 retrogene
retro_pabe_187,
Pan troglodytes ENSPTRG00000013641 ortholog_one2one 2 retrogenes
retro_ptro_2504, retro_ptro_3161,
Sus scrofa ENSSSCG00000007487 ortholog_one2one 2 retrogenes
retro_sscr_1009, retro_sscr_787,
Ictidomys tridecemlineatus ENSSTOG00000028253 ortholog_one2one 1 retrogene
retro_itri_1565,
Tarsius syrichta ENSTSYG00000008974 ortholog_one2one 4 retrogenes
retro_tsyr_1040, retro_tsyr_1667, retro_tsyr_281, retro_tsyr_702,
Tursiops truncatus ENSTTRG00000003850 ortholog_one2one 3 retrogenes
retro_ttru_103, retro_ttru_861, retro_ttru_898,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_598 76.00 92.54
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2. retro_cpor_1417 81.06 97.76
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3. retro_cpor_1428 64.80 91.79
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Download FASTA sequences of all ENSCPOG00000012478 retrocopies