Parental gene: | RPS28, ENSCPOG00000022876 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_195:484708..485221(+) |
>ENSCPOG00000022876
ATGGACACGAGTCGCGTGCAGCCCATCAAGCTGGCCAGGGTCACCAAAGTGCTGGGCAGGACCGGCTCACAGGGACAGTG
CACGCAGGTGCGCGTGGAGTTCATGGACGACACGAGCCGCTCCATCATCCGCAACGTGAAGGGGCCGGTGCGCGAGGGCG
ACGTGCTGACCCTGTTGGAATCGGAGCGGGAAGCCCGGAGGTTGCGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 35 .83 RPM |
| SRP017611_kidney | 75 .37 RPM |
| SRP017611_liver | 48 .10 RPM |
| SRP040447_lung | 240 .20 RPM |
| SRP040447_skeletal_muscle | 248 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004917 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000002468 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000017256 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000029923 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000023621 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000028895 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000003890 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000067288 | possible_ortholog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000042886 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_176 | 65.22 | 98.55 | Please wait, loading  |
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| 2. | retro_cpor_702 | 91.43 | 100.00 | Please wait, loading |
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| 3. | retro_cpor_1092 | 68.63 | 73.91 | Please wait, loading |
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| 4. | retro_cpor_1485 | 67.65 | 98.55 | Please wait, loading |
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| 5. | retro_cpor_1504 | 82.46 | 82.61 | Please wait, loading |
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Download FASTA sequences of all ENSCPOG00000022876 retrocopies