Parental gene:

ENSDNOG00000009976

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4093:8864..33224(+)


>ENSDNOG00000009976
ATGAGGCCGCAGCAGGCGCCGGTGTCCGGGAAGGTCTTCATTCAGCGAGACTACAGCAGTGGCACACGCTGCCAGTTTCA
GACCAAGTTCCCCGCGGAGCTGGAGAACCGGATTGATAGACAACAGTTTGAAGAAACAGTTCGAACACTAAATAACCTTT
ATGCAGAAGCGGAGAAGCTCGGGGGCCAGTCACTCGAATGTCTGGCTTGTTTAACAGCTTATATCCTATGCATGGAAACT
TATGAGAAGGTTCTGAAGAAAGTCTCCAAATACATTCAAGAGCAGAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCT
GACAGATCCCATTGAGAGAGGACTTCGAGTTATTGAAATTACCATTTATGAAGACAGAGGCATGAGCAGTGGAAGATAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 8 .56 RPM
SRP012922_cerebellum 11 .13 RPM
SRP012922_heart 1 .86 RPM
SRP012922_kidney 10 .40 RPM
SRP012922_liver 4 .64 RPM
SRP012922_lung 11 .91 RPM
SRP012922_quadricep_muscle 2 .25 RPM
SRP012922_spleen 13 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002741 ortholog_one2many 1 retrogene
retro_amel_1785,
Erinaceus europaeus ENSEEUG00000013699 possible_ortholog 1 retrogene
retro_eeur_588,
Felis catus ENSFCAG00000018740 ortholog_one2many 3 retrogenes
retro_fcat_1209, retro_fcat_1958, retro_fcat_975,
Homo sapiens ENSG00000147533 ortholog_one2many 1 retrogene
retro_hsap_3862,
Loxodonta africana ENSLAFG00000009146 ortholog_one2many 1 retrogene
retro_lafr_273,
Microcebus murinus ENSMICG00000000940 ortholog_one2many 1 retrogene
retro_mmur_721,
Myotis lucifugus ENSMLUG00000014516 ortholog_one2many 2 retrogenes
retro_mluc_1348, retro_mluc_787,
Monodelphis domestica ENSMODG00000010474 ortholog_one2many 2 retrogenes
retro_mdom_1034, retro_mdom_1528,
Mus musculus ENSMUSG00000015341 ortholog_one2many 3 retrogenes
retro_mmus_2687, retro_mmus_312, retro_mmus_3572,
Nomascus leucogenys ENSNLEG00000012577 ortholog_one2many 1 retrogene
retro_nleu_3014,
Oryctolagus cuniculus ENSOCUG00000007546 ortholog_one2many 1 retrogene
retro_ocun_1503,
Otolemur garnettii ENSOGAG00000003707 ortholog_one2many 2 retrogenes
retro_ogar_2968, retro_ogar_3484,
Pongo abelii ENSPPYG00000018542 ortholog_one2many 1 retrogene
retro_pabe_276,
Pan troglodytes ENSPTRG00000020193 ortholog_one2many 1 retrogene
retro_ptro_2632,
Rattus norvegicus ENSRNOG00000017956 ortholog_one2many 1 retrogene
retro_rnor_2793,
Sarcophilus harrisii ENSSHAG00000016094 ortholog_many2many 2 retrogenes
retro_shar_123, retro_shar_626,
Ictidomys tridecemlineatus ENSSTOG00000004024 ortholog_one2many 3 retrogenes
retro_itri_1181, retro_itri_1774, retro_itri_359,
Tarsius syrichta ENSTSYG00000005197 ortholog_one2many 3 retrogenes
retro_tsyr_1835, retro_tsyr_359, retro_tsyr_714,
Tursiops truncatus ENSTTRG00000003557 possible_ortholog 3 retrogenes
retro_ttru_1289, retro_ttru_1410, retro_ttru_516,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_45 90.68 85.61
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2. retro_dnov_194 92.13 63.64
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Download FASTA sequences of all ENSDNOG00000009976 retrocopies