Parental gene: | PSPC1, ENSDNOG00000011078 |
| Aliases: | None |
| Description: | paraspeckle component 1 [Source:HGNC Symbol;Acc:20320] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_6344:39690..97879(-) |
>ENSDNOG00000011078
ATGATGTTAAGAGGAAACTTGAAGCAAGTGCGCATCGAGAAAAACCCCGCCCGCCTGCGCGCGCTCGAGTCGGCAGCCGG
CGAGAGCGACCCGGCGGCCGCGGCGGCCTTGGCTCTGGCCATGGCCGGGGAGCAGGCGCCGCCCCCCGCTGCGCCAGCGG
AGGATCACCCGGAGGAGGACGCGGGCTTCACCATCGACATCAAGAGCTTCCTCAAGCCGGGCGAGAAGACGTACACGCAG
CGCTGCCGCCTCTTCGTGGGTAACTTGCCCACGGACATAACCGAGGAGGACTTCAAGCGGCTTTTCGAGCGCTACGGTGA
GCCCAGCGAGGTCTTCATTAACCGCGACCGCGGCTTCGGCTTCATCCGCCTGNNNNNNNNNNNNNTGGCTGAAGCAAAAG
CAGAACTTGATGGCACCATTTTTAAGAGTAGACCTCTCCGGATTCGCTTTGCTACACATGGAGCAGCTTTAACTGTCAAG
AACCTTTCTCCAGTTGTTTCCAATGAGCTTCTAGAGCAAGCTTTTTCCCAGTTTGGTCCAGTAGAGAAAGCCGTTGTGGT
TGTGGACGATCGTGGTAGAGCTACAGGAAAAGGTTTTGTAGAATTTGCAGCAAAACCTCCTGCACGAAAGGCCCTGGAAA
GATGTGGTGATGGGGCGTTCTTGCTAACAACGACCCCTCGTCCAGTCATTGTGGAACCCATGGAGCAGTTTGATGATGAA
GATGGCTTGCCAGAGAAACTAATGCAGAAAACTCAACAATATCACAAGGAAAGAGAACAGCCTCCACGTTTTGCTCAACC
TGGGACATTTGAGTTTGAGTATGCATCTCGATGGAAAGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATA
GAAACATCAGAGAAGCCAAAGAGAAACTAGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAATTAATGCTAATGAGG
CAAGATCTGATGAGGCGTCAAGAAGAGCTCAGACGCCTGGAAGAACTCAGAAATCAAGAGCTGCAAAAGCAGCAGATACT
GAGACATGAAGAAGAACATCGCCGTCGTGAAGAAGAAATGATAAGACACAGAGAACAGGAAGAACTTAGGCGACAGCAAG
AGGGCTTTAAGCCAAATTATATGGAAAATAGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAAC
ATGGGAGATGCGTTTAGCCCAGCACCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGG
AAGTTTACCTGGCCCGCCTATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATGC
CAGATAATGGAGCAGTGCACAATGATAGATTTCCTCAAGGACCACCAACTCAGATGGGATCACCTATGGGTAGTAGAACA
GGTTCTGAAACCCCTCAAGCACCAATGAGTGGTGTGGGTCCTGTGAGTGGTGGTCCTGGTGGTTTTGGCAGAGGAAGCCA
AGGCAGCAACTTTGAAGGCCCCAATAAGCGTCGTAGATATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 60 .29 RPM |
| SRP012922_cerebellum | 46 .74 RPM |
| SRP012922_heart | 9 .05 RPM |
| SRP012922_kidney | 15 .33 RPM |
| SRP012922_liver | 18 .73 RPM |
| SRP012922_lung | 28 .71 RPM |
| SRP012922_quadricep_muscle | 7 .44 RPM |
| SRP012922_spleen | 39 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Tupaia belangeri | ENSTBEG00000002361 | ortholog_one2one | 2 retrogenes | |
| Xiphophorus maculatus | ENSXMAG00000007929 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0004227 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_488 | 50.62 | 59.81 | Please wait, loading  |
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| 2. | retro_dnov_1278 | 54.09 | 52.88 | Please wait, loading |
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Download FASTA sequences of all ENSDNOG00000011078 retrocopies