Parental gene:

PPP6C, ENSDNOG00000015319

Aliases:None
Description:protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3327:298793..326755(-)


>ENSDNOG00000015319
ATGGCGCCACTAGACTTGGACAAGTATGTGGAGATAGCGCGGCTATGCAAGTACCTGCCGGAGAACGACCTAAAGCGGTT
GTGTGACTATGTTTGTGACCTCCTCTTGGAAGAGTCAAATGTTCAGCCAGTGTCAACACCAGTAACAGTGTGTGGAGACA
TACATGGACAGTTTTATGACCTTTGTGAACTATTCAGAACTGGAGGTCAGGTTCCTGACACAAACTACATATTTATGGGT
GACTTTGTAGACAGAGGTTATTATAGTTTGGAGACTTTCACTTACCTTCTTGCACTAAAGGCTAAATGGCCTGATCGTAT
TACACTCTTGCGAGGAAATCATGAAAGTAGACAGATAACACAAGTATATGGATTTTATGATGAGTGCCAAACCAAATATG
GAAATGCTAATGCATGGAGATATTGTACCAAAGTTTTTGACATGCTCACAGTAGCAGCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTTCATATCAACAACTTAAAACTCATCTGCAGAGCACACCAACTAGTG
CACGAAGGCTATAAATTTATGTTTGACGAGAAGCTGGTAACAGTTTGGTCTGCTCCTAACTACTGCTATCGTTGTGGAAA
TATTGCCTCCATCATGGTCTTCAAAGATGTAAATACAAGAGAACCAAAGTTATTCCGGGCAGTTCCAGATTCAGAGCGTG
TTATTCCTCCCAGAACGACGACGCCGTATTTCCTTTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 27 .03 RPM
SRP012922_cerebellum 15 .40 RPM
SRP012922_heart 8 .82 RPM
SRP012922_kidney 13 .96 RPM
SRP012922_liver 9 .75 RPM
SRP012922_lung 31 .61 RPM
SRP012922_quadricep_muscle 13 .67 RPM
SRP012922_spleen 24 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012357 ortholog_one2one 3 retrogenes
retro_chof_1759, retro_chof_183, retro_chof_608,
Erinaceus europaeus ENSEEUG00000010197 ortholog_one2one 1 retrogene
retro_eeur_706,
Macaca mulatta ENSMMUG00000020549 ortholog_one2one 1 retrogene
retro_mmul_698,
Rattus norvegicus ENSRNOG00000015145 ortholog_one2one 1 retrogene
retro_rnor_2074,
Sarcophilus harrisii ENSSHAG00000008282 ortholog_one2one 1 retrogene
retro_shar_146,
Sus scrofa ENSSSCG00000005600 ortholog_one2one 1 retrogene
retro_sscr_243,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1700 76.43 50.16
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Download FASTA sequences of all ENSDNOG00000015319 retrocopies