RetrogeneDB ID: | retro_chof_1759 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_377390:527..1157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP6C | ||
Ensembl ID: | ENSCHOG00000012357 | ||
Aliases: | None | ||
Description: | protein phosphatase 6, catalytic subunit [Source:HGNC Symbol;Acc:9323] |
Percent Identity: | 88.57 % |
Parental protein coverage: | 69.08 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | QFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFY |
QFYD.CELFRTG.QVPDTNYIFMGDFVDR.YY.LETFTYLLALKAKWPD.IT.L.GNHE.RQ.T.VY.FY | |
Retrocopy | QFYDFCELFRTGSQVPDTNYIFMGDFVDRNYYRLETFTYLLALKAKWPDHITVL*GNHENRQKTEVYRFY |
Parental | DECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVW |
D.CQTKYGNA.A.RYCTKVFDM.TVAALIDEQILCVHGGLSP..KTLDQI.TIE.NQ.IPHKGAFCDLVW | |
Retrocopy | DDCQTKYGNADARRYCTKVFDMPTVAALIDEQILCVHGGLSPESKTLDQI*TIEWNQQIPHKGAFCDLVW |
Parental | SDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQPMYEGYKFMFDEKLVTVGFAPNYCYHCG |
SDPED..T.AISP.GAGWLFGAKVTNEFVHINNLKLICRAHQPMYEGYKFMFDEKLVTVGFAPNYCYHCG | |
Retrocopy | SDPEDAVT*AISP*GAGWLFGAKVTNEFVHINNLKLICRAHQPMYEGYKFMFDEKLVTVGFAPNYCYHCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012357 | 3 retrocopies |
retro_chof_1759 , retro_chof_183, retro_chof_608,
|
Dasypus novemcinctus | ENSDNOG00000015319 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010197 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020549 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015145 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008282 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005600 | 1 retrocopy |