RetrogeneDB ID: | retro_rnor_2074 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:155865499..155866097(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppp6c | ||
Ensembl ID: | ENSRNOG00000015145 | ||
Aliases: | None | ||
Description: | Serine/threonine-protein phosphatase 6 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:Q64620] |
Percent Identity: | 65.02 % |
Parental protein coverage: | 65.25 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | ELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTK |
..FRTG...PDTN..FMG..VDRGYYSLE.FT.LLA.K.KWP...T.LRGN.ES.....V.GFYD.CQTK | |
Retrocopy | QVFRTGVKSPDTNCTFMG*CVDRGYYSLESFTHLLAIKPKWPGCTTFLRGNYESG*VI*VCGFYDACQTK |
Parental | YGNANAWRYCTKVFDMLTVAALIDEQILCVHG-GLSPDIKTLDQIRTIER-NQEIPHKGAFCDLVWSDPE |
YGNANAWR.CTKV.DMLTVAAL.DEQIL.VH...LSP.IKTLDQI..IE......PH.GAF.DL..S.PE | |
Retrocopy | YGNANAWRCCTKVSDMLTVAALLDEQILYVHS<RLSPCIKTLDQIQIIEQIRKSLPH*GAF-DLA*SVPE |
Parental | DVDT-W-AISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNY |
DV.T.W.AIS....G.LF..KV.NEFVH.N.LK.I.RAH.LVHE...F..D..LVTV.SAP.Y | |
Retrocopy | DVETLW<AISSKAGG*LF*TKVANEFVHFNCLKFIFRAHELVHEDCNFLCDKDLVTVRSAPHY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .20 RPM |
SRP017611_liver | 0 .00 RPM | 21 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012357 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000015319 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000010197 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020549 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015145 | 1 retrocopy |
retro_rnor_2074 ,
|
Sarcophilus harrisii | ENSSHAG00000008282 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005600 | 1 retrocopy |