Parental gene:

RPL6, ENSDNOG00000017032

Aliases:None
Description:ribosomal protein L6 [Source:HGNC Symbol;Acc:10362]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_901:14148..18367(-)


>ENSDNOG00000017032
ATGGCGGGTGAAAAAGCCGAGAAGCCGGCAGGCACTAAAGAGAAGAAACCTGAAGCCAAGAAGGCTGATGCCAGTGGCAA
GGTTGAGAAGGGTAGCCCCAAGACCAAAAAGCTCAAGAAAGGGAAACCTCACTGCAGCCGAAATCCAGTGCTGGTCAGAG
GAATTGGCAGATATTCCCGATCTGCAATGTATTCCAGAAAGGCCATGTACAAGAGGAAGTACTCAGCAGCTAAATCCAGG
ATTGAAAAGAAAAAGAAGGAGAAAGTTCTTGCTACTGTCACAAAACCCGTTGGTGGTGACAAAAATGGAGGTACACGAGT
GGTTAAACTTCGCAAAATGCCTAGATATTATCCTACTGAAGATGTCCCTCGAAAGCTGTTGAGCCATGGCAAAAAACCCT
TCAGTCAGCACGTGCGAAAGCTGCGATCCAGCATCACTCCCGGGACTGTTCTGATCATCCTCACTGGTCGCCACAGGGGC
AAGAGAGTGGTTTTCCTGAAGCAGCTGAGCAGTGGCTTGTTACTTGTGACTGGACCCCTAGTCCTCAATCGAGTTCCTCT
GCGTAGAACACACCAGAAATTTGTTATTGCCACCTCCACCAAAATTGACATAAATGGTGTGAAAATCCCAAAGCATCTCA
CTGATGCTTACTTCAAGAAGAAGAAGCTCCGTAAGCCCAGACACCAGGAAGGTGAGATCTTCGACACAGAGAAAGAGAAA
TATGAACTTACAGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAACTCATGTCAAAAATCAAAACTGTTCCTCA
ACTCCAAGGCTACCTGCGTTCTGTGTTCTCTCTCACAAATGGAGTTTATCCTCACAAATTGGTGTTCTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 603 .24 RPM
SRP012922_cerebellum 379 .55 RPM
SRP012922_heart 344 .10 RPM
SRP012922_kidney 784 .42 RPM
SRP012922_liver 311 .94 RPM
SRP012922_lung 891 .45 RPM
SRP012922_quadricep_muscle 540 .54 RPM
SRP012922_spleen 1070 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003060 ortholog_one2many 1 retrogene
retro_acar_171,
Bos taurus ENSBTAG00000031723 possible_ortholog 6 retrogenes
retro_btau_1038, retro_btau_1117, retro_btau_1305, retro_btau_16, retro_btau_424, retro_btau_809,
Canis familiaris ENSCAFG00000008873 possible_ortholog 1 retrogene
retro_cfam_36,
Choloepus hoffmanni ENSCHOG00000002917 ortholog_one2one 13 retrogenes
retro_chof_1152, retro_chof_1285, retro_chof_1334, retro_chof_1688, retro_chof_2127, retro_chof_2151, retro_chof_2164, retro_chof_321, retro_chof_421, retro_chof_532, retro_chof_587, retro_chof_930, retro_chof_976,
Callithrix jacchus ENSCJAG00000012450 possible_ortholog 7 retrogenes
retro_cjac_1362, retro_cjac_1620, retro_cjac_1949, retro_cjac_2723, retro_cjac_328, retro_cjac_349, retro_cjac_497,
Cavia porcellus ENSCPOG00000013526 possible_ortholog 8 retrogenes
retro_cpor_1105, retro_cpor_1149, retro_cpor_1486, retro_cpor_382, retro_cpor_412, retro_cpor_651, retro_cpor_731, retro_cpor_982,
Equus caballus ENSECAG00000017514 possible_ortholog 1 retrogene
retro_ecab_811,
Felis catus ENSFCAG00000006858 possible_ortholog 12 retrogenes
retro_fcat_1264, retro_fcat_1370, retro_fcat_1844, retro_fcat_232, retro_fcat_398, retro_fcat_500, retro_fcat_625, retro_fcat_637, retro_fcat_643, retro_fcat_690, retro_fcat_926, retro_fcat_935,
Gorilla gorilla ENSGGOG00000003372 possible_ortholog 16 retrogenes
retro_ggor_1602, retro_ggor_1893, retro_ggor_1898, retro_ggor_2047, retro_ggor_2138, retro_ggor_236, retro_ggor_2569, retro_ggor_2597, retro_ggor_2709, retro_ggor_2745, retro_ggor_290, retro_ggor_2938, retro_ggor_356, retro_ggor_426, retro_ggor_566, retro_ggor_816,
Loxodonta africana ENSLAFG00000002201 ortholog_one2one 2 retrogenes
retro_lafr_157, retro_lafr_683,
Macaca mulatta ENSMMUG00000007433 possible_ortholog 1 retrogene
retro_mmul_171,
Monodelphis domestica ENSMODG00000003096 ortholog_one2one 4 retrogenes
retro_mdom_1556, retro_mdom_1624, retro_mdom_1784, retro_mdom_615,
Mustela putorius furo ENSMPUG00000002526 possible_ortholog 9 retrogenes
retro_mputfur_1116, retro_mputfur_1279, retro_mputfur_1320, retro_mputfur_1367, retro_mputfur_1407, retro_mputfur_1445, retro_mputfur_1489, retro_mputfur_401, retro_mputfur_571,
Mus musculus ENSMUSG00000029614 ortholog_one2many 13 retrogenes
retro_mmus_1264, retro_mmus_1336, retro_mmus_1898, retro_mmus_2684, retro_mmus_276, retro_mmus_3065, retro_mmus_3579, retro_mmus_3611, retro_mmus_3622, retro_mmus_3719, retro_mmus_445, retro_mmus_465, retro_mmus_730,
Nomascus leucogenys ENSNLEG00000027093 possible_ortholog 2 retrogenes
retro_nleu_1813, retro_nleu_43,
Oryctolagus cuniculus ENSOCUG00000003802 possible_ortholog 5 retrogenes
retro_ocun_129, retro_ocun_17, retro_ocun_189, retro_ocun_229, retro_ocun_245,
Pongo abelii ENSPPYG00000025855 possible_ortholog 13 retrogenes
retro_pabe_1764, retro_pabe_1891, retro_pabe_2451, retro_pabe_2493, retro_pabe_2573, retro_pabe_2897, retro_pabe_3314, retro_pabe_358, retro_pabe_3677, retro_pabe_3725, retro_pabe_43, retro_pabe_472, retro_pabe_868,
Rattus norvegicus ENSRNOG00000025936 ortholog_one2many 1 retrogene
retro_rnor_129,
Sarcophilus harrisii ENSSHAG00000007096 ortholog_one2many 2 retrogenes
retro_shar_506, retro_shar_536,
Ictidomys tridecemlineatus ENSSTOG00000009409 possible_ortholog 3 retrogenes
retro_itri_1024, retro_itri_1125, retro_itri_684,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1370 80.58 69.90
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2. retro_dnov_1910 70.81 53.98
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3. retro_dnov_2098 96.02 60.55
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Download FASTA sequences of all ENSDNOG00000017032 retrocopies