RetrogeneDB ID:

retro_ggor_2597

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:61232408..61233267(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL6
Ensembl ID:ENSGGOG00000003372
Aliases:None
Description:60S ribosomal protein L6 [Source:UniProtKB/TrEMBL;Acc:G3QLG0]


Retrocopy-Parental alignment summary:






>retro_ggor_2597
ATGGCAGGTGAAAAAGTTGAGAAGCCAGATACTAAAGAGAAGAAACCCGAAGCCAAGAAGGCTGATGCTGGTGGCAACGT
GCAAGAGGGTAATCTTAAAAGTTAAAAAGCCCAAGAAGAGGAAGCCCTATTGCAGCCACAACCCTGTCCTTGTCAGAGGA
ACTGGCAGGTATTCCCGATCTGCCATGTATTCTAGAAAGGCCATGTATAAGAGGAAGTACTCAGCCGCTAAATCAAAGGT
TGAAAAGAAAAAGAAGGTTCTTGCAACTGTTACAAAACCAGTTGGTGGTGACAAGAATGGTGGTACCCAGGTGGTTAAAC
TTCACAAAATGCCTAGATACTATCCTACTGAAGATGTACCTCGAAAGCTGTTGAGCCACAGCAAAAAGCCCTTCAGTCAG
CATGTGAGAAAACTGCAAGCCAGCATTACCCCTGGGACCATTCTGATCATCCTCACTGGATGCCACAGGGGCAAGAGGGT
GGTTTTCCTGAAGCAGCTGGCTAGTGGCTTGTTCCTTGTGACTGGACCTCTGGTCCTCAATTGAGTTCCTCTACGAGGAA
CACACCAGAAATTTGTCATTGCCACCTCAACCAAAATCGATATCAGCAATGTAAAAATCCCAAAACATCTTACTGATGCT
TACTTCAAGAAGCAGCAGCTGCGGAAGCCCAGACACCAGGAAGGCAAGATCTTCGACACAGAAAAAGAGAAATATGAGAT
TACAGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAAATTTTACCAAAAGTCAAAGCTATTTCTCAGCTCCAGG
GCTACCTGCGATCTGTGTTTGCCCTGACGAATGGAATTTATCCTCACAAATTGGTGTTC

ORF - retro_ggor_2597 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.35 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKA-KKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMY
MAGEKVEKPDTKEKKPEAKK.DAGG.V..GNLK..KKPKK.KP.CS.NPVLVRG.GRYSRSAMYSRKAMY
RetrocopyMAGEKVEKPDTKEKKPEAKKADAGGNVQEGNLKS>KKPKKRKPYCSHNPVLVRGTGRYSRSAMYSRKAMY
ParentalKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRK
KRKYSAAKSKVEKKKK..VLATVTKPVGGDKNGGT.VVKL.KMPRYYPTEDVPRKLLSH.KKPFSQHVRK
RetrocopyKRKYSAAKSKVEKKKK--VLATVTKPVGGDKNGGTQVVKLHKMPRYYPTEDVPRKLLSHSKKPFSQHVRK
ParentalLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIP
L.ASITPGTILIILTG.HRGKRVVFLKQLASGL.LVTGPLVLN.VPLR.THQKFVIATSTKIDISNVKIP
RetrocopyLQASITPGTILIILTGCHRGKRVVFLKQLASGLFLVTGPLVLN*VPLRGTHQKFVIATSTKIDISNVKIP
ParentalKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTN
KHLTDAYFKK..LRKPRHQEG.IFDTEKEKYEITEQRKIDQKAVDSQILPK.KAI.QLQGYLRSVFALTN
RetrocopyKHLTDAYFKKQQLRKPRHQEGKIFDTEKEKYEITEQRKIDQKAVDSQILPKVKAISQLQGYLRSVFALTN
ParentalGIYPHKLVF
GIYPHKLVF
RetrocopyGIYPHKLVF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 169 .47 RPM
SRP007412_cerebellum 0 .16 RPM 173 .27 RPM
SRP007412_heart 0 .09 RPM 107 .76 RPM
SRP007412_kidney 0 .08 RPM 477 .50 RPM
SRP007412_liver 0 .08 RPM 364 .57 RPM
SRP007412_testis 0 .31 RPM 199 .74 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2597 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2597 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3856

Parental genes homology:
Parental genes homology involve 33 parental genes, and 835 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000030601 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000851010 retrocopies
Bos taurus ENSBTAG000000317236 retrocopies
Canis familiaris ENSCAFG000000088731 retrocopy
Choloepus hoffmanni ENSCHOG0000000291713 retrocopies
Callithrix jacchus ENSCJAG000000124507 retrocopies
Cavia porcellus ENSCPOG000000135268 retrocopies
Dasypus novemcinctus ENSDNOG000000170323 retrocopies
Dipodomys ordii ENSDORG000000057931 retrocopy
Equus caballus ENSECAG000000175141 retrocopy
Erinaceus europaeus ENSEEUG000000002813 retrocopies
Felis catus ENSFCAG0000000685812 retrocopies
Homo sapiens ENSG0000008900926 retrocopies
Gorilla gorilla ENSGGOG00000003372 16 retrocopies
Loxodonta africana ENSLAFG000000022012 retrocopies
Microcebus murinus ENSMICG0000000296125 retrocopies
Macaca mulatta ENSMMUG000000074331 retrocopy
Monodelphis domestica ENSMODG000000030964 retrocopies
Mustela putorius furoENSMPUG000000025269 retrocopies
Mus musculus ENSMUSG0000002961413 retrocopies
Nomascus leucogenys ENSNLEG000000270932 retrocopies
Oryctolagus cuniculus ENSOCUG000000038025 retrocopies
Ochotona princeps ENSOPRG000000118002 retrocopies
Pongo abelii ENSPPYG0000002585513 retrocopies
Pteropus vampyrus ENSPVAG000000124092 retrocopies
Rattus norvegicus ENSRNOG000000259361 retrocopy
Sarcophilus harrisii ENSSHAG000000070962 retrocopies
Sus scrofa ENSSSCG000000248254 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000094093 retrocopies
Tupaia belangeri ENSTBEG00000008626605 retrocopies
retro_tbel_1003, retro_tbel_1011, retro_tbel_1018, retro_tbel_1025, retro_tbel_1035, retro_tbel_1039, retro_tbel_104, retro_tbel_1041, retro_tbel_1042, retro_tbel_105, retro_tbel_1064, retro_tbel_1074, retro_tbel_1077, retro_tbel_1080, retro_tbel_1085, retro_tbel_109, retro_tbel_1094, retro_tbel_1096, retro_tbel_1097, retro_tbel_111, retro_tbel_1110, retro_tbel_1116, retro_tbel_1124, retro_tbel_1131, retro_tbel_1142, retro_tbel_1145, retro_tbel_1157, retro_tbel_1159, retro_tbel_1163, retro_tbel_1172, retro_tbel_118, retro_tbel_1187, retro_tbel_1192, retro_tbel_1197, retro_tbel_120, retro_tbel_1211, retro_tbel_1212, retro_tbel_1214, retro_tbel_1221, retro_tbel_1234, retro_tbel_1236, retro_tbel_1238, retro_tbel_1240, retro_tbel_1242, retro_tbel_1252, retro_tbel_1253, retro_tbel_1256, retro_tbel_1276, retro_tbel_128, retro_tbel_1287, retro_tbel_1291, retro_tbel_1292, retro_tbel_1297, retro_tbel_1307, retro_tbel_1308, retro_tbel_1309, retro_tbel_1316, retro_tbel_132, retro_tbel_1321, retro_tbel_1325, retro_tbel_1326, retro_tbel_1339, retro_tbel_1341, retro_tbel_1342, retro_tbel_1353, retro_tbel_1376, retro_tbel_139, retro_tbel_1399, retro_tbel_1401, retro_tbel_1408, retro_tbel_1409, retro_tbel_1412, retro_tbel_1432, retro_tbel_1438, retro_tbel_144, retro_tbel_1440, retro_tbel_1441, retro_tbel_1445, retro_tbel_1447, retro_tbel_1453, retro_tbel_1455, retro_tbel_1458, retro_tbel_1464, retro_tbel_1495, retro_tbel_1496, retro_tbel_150, retro_tbel_1508, retro_tbel_1511, retro_tbel_1517, retro_tbel_1520, retro_tbel_1526, retro_tbel_1536, retro_tbel_1544, retro_tbel_1547, retro_tbel_1553, retro_tbel_1559, retro_tbel_1560, retro_tbel_1578, retro_tbel_158, retro_tbel_1581, retro_tbel_1582, retro_tbel_1585, retro_tbel_1598, retro_tbel_1628, retro_tbel_1631, retro_tbel_1640, retro_tbel_1648, retro_tbel_165, retro_tbel_1652, retro_tbel_1660, retro_tbel_1670, retro_tbel_1672, retro_tbel_1674, retro_tbel_1679, retro_tbel_1681, retro_tbel_1687, retro_tbel_1691, retro_tbel_1702, retro_tbel_1703, retro_tbel_1706, retro_tbel_1732, retro_tbel_1736, retro_tbel_1737, retro_tbel_1742, retro_tbel_1743, retro_tbel_1751, retro_tbel_1759, retro_tbel_1771, retro_tbel_1782, retro_tbel_1788, retro_tbel_1799, retro_tbel_1805, retro_tbel_181, retro_tbel_1816, retro_tbel_1828, retro_tbel_1834, retro_tbel_1843, retro_tbel_1850, retro_tbel_1854, retro_tbel_1859, retro_tbel_186, retro_tbel_1867, retro_tbel_187, retro_tbel_1884, retro_tbel_1898, retro_tbel_190, retro_tbel_1900, retro_tbel_1909, retro_tbel_191, retro_tbel_192, retro_tbel_1926, retro_tbel_1927, retro_tbel_1937, retro_tbel_1949, retro_tbel_1953, retro_tbel_1956, retro_tbel_1961, retro_tbel_1974, retro_tbel_1983, retro_tbel_1985, retro_tbel_1990, retro_tbel_2003, retro_tbel_2007, retro_tbel_2012, retro_tbel_2018, retro_tbel_2019, retro_tbel_2029, retro_tbel_203, retro_tbel_2038, retro_tbel_2041, retro_tbel_2052, retro_tbel_2056, retro_tbel_2064, retro_tbel_2066, retro_tbel_2070, retro_tbel_2082, retro_tbel_2092, retro_tbel_2096, retro_tbel_2097, retro_tbel_212, retro_tbel_214, retro_tbel_215, retro_tbel_2158, retro_tbel_218, retro_tbel_2181, retro_tbel_2184, retro_tbel_2185, retro_tbel_219, retro_tbel_2222, retro_tbel_2235, retro_tbel_2237, retro_tbel_2244, retro_tbel_225, retro_tbel_2250, retro_tbel_2256, retro_tbel_2269, retro_tbel_227, retro_tbel_2273, retro_tbel_2275, retro_tbel_2301, retro_tbel_2305, retro_tbel_231, retro_tbel_2321, retro_tbel_2323, retro_tbel_233, retro_tbel_2331, retro_tbel_2342, retro_tbel_2375, retro_tbel_2389, retro_tbel_2396, retro_tbel_2411, retro_tbel_242, retro_tbel_2421, retro_tbel_243, retro_tbel_2446, retro_tbel_2456, retro_tbel_2471, retro_tbel_2476, retro_tbel_2481, retro_tbel_2499, retro_tbel_2501, retro_tbel_2502, retro_tbel_2507, retro_tbel_2509, retro_tbel_2514, retro_tbel_252, retro_tbel_2523, retro_tbel_2527, retro_tbel_253, retro_tbel_2530, retro_tbel_2533, retro_tbel_2537, retro_tbel_2546, retro_tbel_255, retro_tbel_256, retro_tbel_2560, retro_tbel_2565, retro_tbel_2568, retro_tbel_2594, retro_tbel_2597, retro_tbel_260, retro_tbel_2632, retro_tbel_2633, retro_tbel_2639, retro_tbel_2642, retro_tbel_2643, retro_tbel_2645, retro_tbel_2648, retro_tbel_2650, retro_tbel_2676, retro_tbel_2678, retro_tbel_2679, retro_tbel_2684, retro_tbel_2695, retro_tbel_2708, retro_tbel_2717, retro_tbel_2724, retro_tbel_2740, retro_tbel_2742, retro_tbel_2750, retro_tbel_2754, retro_tbel_278, retro_tbel_2785, retro_tbel_2791, retro_tbel_2796, retro_tbel_2797, retro_tbel_2800, retro_tbel_2803, retro_tbel_2804, retro_tbel_2805, retro_tbel_2812, retro_tbel_2817, retro_tbel_284, retro_tbel_2842, retro_tbel_2843, retro_tbel_2845, retro_tbel_2858, retro_tbel_2861, retro_tbel_2866, retro_tbel_2867, retro_tbel_287, retro_tbel_2870, retro_tbel_2876, retro_tbel_288, retro_tbel_2887, retro_tbel_291, retro_tbel_2912, retro_tbel_2914, retro_tbel_2919, retro_tbel_2920, retro_tbel_2928, retro_tbel_2958, retro_tbel_2968, retro_tbel_297, retro_tbel_2987, retro_tbel_2997, retro_tbel_300, retro_tbel_3003, retro_tbel_3009, retro_tbel_3012, retro_tbel_3019, retro_tbel_3029, retro_tbel_3030, retro_tbel_3034, retro_tbel_3036, retro_tbel_3038, retro_tbel_3039, retro_tbel_3043, retro_tbel_3045, retro_tbel_3047, retro_tbel_3049, retro_tbel_3052, retro_tbel_3053, retro_tbel_3057, retro_tbel_3063, retro_tbel_3064, retro_tbel_3066, retro_tbel_3068, retro_tbel_3078, retro_tbel_308, retro_tbel_3083, retro_tbel_3086, retro_tbel_3113, retro_tbel_3124, retro_tbel_3128, retro_tbel_313, retro_tbel_3131, retro_tbel_3133, retro_tbel_3139, retro_tbel_3146, retro_tbel_3157, retro_tbel_3158, retro_tbel_3163, retro_tbel_3166, retro_tbel_3169, retro_tbel_3176, retro_tbel_3177, retro_tbel_3178, retro_tbel_318, retro_tbel_3185, retro_tbel_3199, retro_tbel_3206, retro_tbel_321, retro_tbel_3221, retro_tbel_3225, retro_tbel_3226, retro_tbel_3249, retro_tbel_3257, retro_tbel_3263, retro_tbel_327, retro_tbel_3275, retro_tbel_3278, retro_tbel_3279, retro_tbel_3289, retro_tbel_3296, retro_tbel_3308, retro_tbel_3312, retro_tbel_3319, retro_tbel_3322, retro_tbel_3326, retro_tbel_3328, retro_tbel_334, retro_tbel_3348, retro_tbel_3357, retro_tbel_3374, retro_tbel_3375, retro_tbel_3382, retro_tbel_3394, retro_tbel_3395, retro_tbel_3411, retro_tbel_3427, retro_tbel_3433, retro_tbel_3439, retro_tbel_3440, retro_tbel_3455, retro_tbel_3474, retro_tbel_351, retro_tbel_3511, retro_tbel_3518, retro_tbel_3521, retro_tbel_3532, retro_tbel_3533, retro_tbel_3551, retro_tbel_3553, retro_tbel_3563, retro_tbel_3569, retro_tbel_357, retro_tbel_3574, retro_tbel_3579, retro_tbel_3582, retro_tbel_3584, retro_tbel_3588, retro_tbel_3594, retro_tbel_3599, retro_tbel_3612, retro_tbel_3614, retro_tbel_3629, retro_tbel_3633, retro_tbel_3643, retro_tbel_3645, retro_tbel_3646, retro_tbel_365, retro_tbel_3668, retro_tbel_3672, retro_tbel_3673, retro_tbel_368, retro_tbel_369, retro_tbel_3706, retro_tbel_3714, retro_tbel_3740, retro_tbel_3746, retro_tbel_3753, retro_tbel_376, retro_tbel_3765, retro_tbel_3768, retro_tbel_3773, retro_tbel_3778, retro_tbel_3787, retro_tbel_380, retro_tbel_3804, retro_tbel_3811, retro_tbel_3817, retro_tbel_3819, retro_tbel_3825, retro_tbel_3842, retro_tbel_3845, retro_tbel_3857, retro_tbel_3902, retro_tbel_3904, retro_tbel_3906, retro_tbel_3908, retro_tbel_3909, retro_tbel_3942, retro_tbel_3943, retro_tbel_3952, retro_tbel_3953, retro_tbel_3965, retro_tbel_3978, retro_tbel_3985, retro_tbel_3990, retro_tbel_3991, retro_tbel_4000, retro_tbel_4001, retro_tbel_4009, retro_tbel_403, retro_tbel_4038, retro_tbel_4040, retro_tbel_4041, retro_tbel_4044, retro_tbel_4060, retro_tbel_409, retro_tbel_4108, retro_tbel_4109, retro_tbel_4112, retro_tbel_4132, retro_tbel_4140, retro_tbel_4146, retro_tbel_4152, retro_tbel_4156, retro_tbel_4159, retro_tbel_4178, retro_tbel_4201, retro_tbel_4218, retro_tbel_4232, retro_tbel_424, retro_tbel_4248, retro_tbel_4253, retro_tbel_4264, retro_tbel_4267, retro_tbel_4276, retro_tbel_4281, retro_tbel_4291, retro_tbel_4301, retro_tbel_4303, retro_tbel_4306, retro_tbel_4321, retro_tbel_4328, retro_tbel_4333, retro_tbel_434, retro_tbel_4344, retro_tbel_4349, retro_tbel_4353, retro_tbel_4359, retro_tbel_437, retro_tbel_4375, retro_tbel_4394, retro_tbel_4395, retro_tbel_4396, retro_tbel_4397, retro_tbel_4445, retro_tbel_4446, retro_tbel_4455, retro_tbel_4468, retro_tbel_4476, retro_tbel_4483, retro_tbel_4508, retro_tbel_4517, retro_tbel_452, retro_tbel_4544, retro_tbel_4559, retro_tbel_4576, retro_tbel_4580, retro_tbel_4582, retro_tbel_4591, retro_tbel_4594, retro_tbel_4598, retro_tbel_4603, retro_tbel_4618, retro_tbel_4619, retro_tbel_4633, retro_tbel_4637, retro_tbel_464, retro_tbel_4640, retro_tbel_4662, retro_tbel_469, retro_tbel_4691, retro_tbel_4694, retro_tbel_4701, retro_tbel_4702, retro_tbel_4704, retro_tbel_4709, retro_tbel_4717, retro_tbel_4721, retro_tbel_4722, retro_tbel_4731, retro_tbel_478, retro_tbel_486, retro_tbel_493, retro_tbel_497, retro_tbel_498, retro_tbel_505, retro_tbel_506, retro_tbel_515, retro_tbel_516, retro_tbel_520, retro_tbel_523, retro_tbel_524, retro_tbel_529, retro_tbel_533, retro_tbel_546, retro_tbel_548, retro_tbel_549, retro_tbel_554, retro_tbel_557, retro_tbel_562, retro_tbel_568, retro_tbel_571, retro_tbel_581, retro_tbel_589, retro_tbel_608, retro_tbel_624, retro_tbel_625, retro_tbel_629, retro_tbel_630, retro_tbel_642, retro_tbel_651, retro_tbel_652, retro_tbel_653, retro_tbel_656, retro_tbel_660, retro_tbel_663, retro_tbel_668, retro_tbel_672, retro_tbel_684, retro_tbel_685, retro_tbel_690, retro_tbel_693, retro_tbel_694, retro_tbel_699, retro_tbel_708, retro_tbel_712, retro_tbel_717, retro_tbel_719, retro_tbel_72, retro_tbel_723, retro_tbel_724, retro_tbel_731, retro_tbel_748, retro_tbel_75, retro_tbel_769, retro_tbel_77, retro_tbel_773, retro_tbel_775, retro_tbel_778, retro_tbel_785, retro_tbel_797, retro_tbel_81, retro_tbel_837, retro_tbel_847, retro_tbel_85, retro_tbel_855, retro_tbel_858, retro_tbel_86, retro_tbel_876, retro_tbel_879, retro_tbel_890, retro_tbel_894, retro_tbel_895, retro_tbel_896, retro_tbel_904, retro_tbel_933, retro_tbel_944, retro_tbel_948, retro_tbel_951, retro_tbel_977,
Tarsius syrichta ENSTSYG0000000949222 retrocopies
Tursiops truncatus ENSTTRG000000092687 retrocopies
Vicugna pacos ENSVPAG000000070005 retrocopies



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