Parental gene:

HDGF, ENSECAG00000011178

Aliases:None
Description:hepatoma-derived growth factor [Source:HGNC Symbol;Acc:4856]
Organism:Horse (Equus caballus)
Coordinates:5:41551546..41554728(+)


>ENSECAG00000011178
ATTGACGAGATGCCTGAGGCTGCAGTGAAATCAACAGCCAACAAATACCAAGTGTTTTTTTTCGGGACCCACGAGACGGC
ATTCCTGGGCCCCAAAGACCTCTTCCCTTACGAGGAGTCCAAGGAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCA
GCGAGGGGCTGTGGGAGATCGAGAACAACCCTACTGTCAAGGCTTCTGGCTACCAGTCCTCCCAGAAAAAGAGCTCTGTG
GAAGAGCCCGAACCCGAGCCGGAAGCCACAGAGGGTGACGGTGACAAGAAGGGGAATGCCGAGGGTAGCAGTGATGAGGA
AGGGAAGCTGGTCATTGATGAGCCAACCAAGGAGAAGAATGAGAAGGGGGCGCTGAAGAGGAGAGCAGGGGACCTGCTGG
AGGACTCCCCTAAACGTCCCAAGGAGGCAGAAGACCCCGAAGGGGAGGAGAAAGAGGCGGCCACCTTGGAGAGTGAGAGG
CCCCTCCCTGTGGAGGTGGAGAAGAACAGCACCCGCTCTGAGCCTGGCTCTGGCCGGGGGCCTCCTCAGGAGGAAGAAGA
GGAGGAAGAGGAGGAAGAGGCTGCCAAGGAAGATGCTGAAGCCCCAGGCATCAGAGATCATGAGAGCCTGTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 80 .40 RPM
SRP021940_cerebellum 150 .81 RPM
SRP021940_embryo 222 .56 RPM
SRP021940_placental_villous 124 .85 RPM
SRP021940_synovial_membrane 101 .44 RPM
SRP021940_testis 489 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039793 ortholog_one2one 1 retrogene
retro_btau_216,
Callithrix jacchus ENSCJAG00000006157 ortholog_one2one 2 retrogenes
retro_cjac_338, retro_cjac_4022,
Dasypus novemcinctus ENSDNOG00000010231 ortholog_one2many 1 retrogene
retro_dnov_4,
Echinops telfairi ENSETEG00000005243 ortholog_one2one 1 retrogene
retro_etel_1899,
Homo sapiens ENSG00000143321 ortholog_one2one 1 retrogene
retro_hsap_33,
Myotis lucifugus ENSMLUG00000010413 ortholog_one2one 1 retrogene
retro_mluc_257,
Mus musculus ENSMUSG00000004897 ortholog_one2one 1 retrogene
retro_mmus_3647,
Pongo abelii ENSPPYG00000000703 ortholog_one2one 1 retrogene
retro_pabe_6,
Pan troglodytes ENSPTRG00000001474 ortholog_one2one 1 retrogene
retro_ptro_1,
Sus scrofa ENSSSCG00000006468 ortholog_one2one 1 retrogene
retro_sscr_65,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_5 57.75 89.05
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Download FASTA sequences of all ENSECAG00000011178 retrocopies