Parental gene:

GTSF1, ENSECAG00000013618

Aliases:None
Description:gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565]
Organism:Horse (Equus caballus)
Coordinates:6:71251018..71261623(-)


>ENSECAG00000013618
ATGGAAAAAACTTACATCGATTCCCTGGACCCTGAAAAGCTATTGCAATGCCCCTATGATAAAAACCACCAGATCAGGGC
CTGCAGATTTCCTTATCATCTTGTCAAGTGCAGAAAGAATCATCCTGATGTTGCAAACAAATTGGCTACTTGTCCCTTCA
ATGCTCGCCACCAGGTTCCTCGGGCCGAAATCAGTCATCATATCTCGAGCTGTGATGACAAAAGTTGTATTGAGCAAGAT
GTTGTCAACCAAACCAGGAACCTTGGACAAGAGACTCTGGCTGAGAGTACATGGCAGTGCCCTCCTTGTGATGAAGACTG
GGATAAAGATTTGTGGGAACAGACCAGCACCCCATTTGTCTGGGGTACAACCAACTACTGTGGCAACAACAGCCCTGCAA
GCAACATAGTTATGGAACATAAGAGCAACCTGGCTTCAGGCATGCGCGTTCCCAAGTCTCTGCCGTATGTTCTGCCATGG
AAAAACAATGGAAATGCACAGTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 0 .12 RPM
SRP021940_cerebellum 0 .05 RPM
SRP021940_embryo 0 .28 RPM
SRP021940_placental_villous 8 .13 RPM
SRP021940_synovial_membrane 1 .35 RPM
SRP021940_testis 170 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014260 ortholog_one2one 3 retrogenes
retro_acar_135, retro_acar_143, retro_acar_92,
Ailuropoda melanoleuca ENSAMEG00000000939 ortholog_one2one 6 retrogenes
retro_amel_1420, retro_amel_324, retro_amel_338, retro_amel_639, retro_amel_724, retro_amel_796,
Bos taurus ENSBTAG00000018085 ortholog_one2one 1 retrogene
retro_btau_1316,
Canis familiaris ENSCAFG00000006465 ortholog_one2many 2 retrogenes
retro_cfam_377, retro_cfam_592,
Choloepus hoffmanni ENSCHOG00000001659 ortholog_one2one 2 retrogenes
retro_chof_1261, retro_chof_950,
Callithrix jacchus ENSCJAG00000018968 ortholog_one2one 1 retrogene
retro_cjac_904,
Dasypus novemcinctus ENSDNOG00000001438 ortholog_one2one 4 retrogenes
retro_dnov_2233, retro_dnov_2536, retro_dnov_256, retro_dnov_76,
Echinops telfairi ENSETEG00000009310 ortholog_one2one 1 retrogene
retro_etel_1619,
Felis catus ENSFCAG00000010156 ortholog_one2many 5 retrogenes
retro_fcat_1252, retro_fcat_1302, retro_fcat_1543, retro_fcat_557, retro_fcat_940,
Loxodonta africana ENSLAFG00000016318 ortholog_one2one 1 retrogene
retro_lafr_1185,
Macropus eugenii ENSMEUG00000016206 ortholog_one2many 1 retrogene
retro_meug_942,
Microcebus murinus ENSMICG00000008444 ortholog_one2one 1 retrogene
retro_mmur_842,
Myotis lucifugus ENSMLUG00000012961 ortholog_one2many 3 retrogenes
retro_mluc_1177, retro_mluc_1286, retro_mluc_56,
Mustela putorius furo ENSMPUG00000005669 ortholog_one2many 3 retrogenes
retro_mputfur_1249, retro_mputfur_155, retro_mputfur_62,
Otolemur garnettii ENSOGAG00000017227 ortholog_one2one 2 retrogenes
retro_ogar_2617, retro_ogar_3251,
Rattus norvegicus ENSRNOG00000036831 ortholog_one2one 1 retrogene
retro_rnor_2525,
Tarsius syrichta ENSTSYG00000004679 ortholog_one2one 2 retrogenes
retro_tsyr_1437, retro_tsyr_1880,
Tursiops truncatus ENSTTRG00000004470 ortholog_one2one 1 retrogene
retro_ttru_249,
Vicugna pacos ENSVPAG00000007016 ortholog_one2one 5 retrogenes
retro_vpac_103, retro_vpac_203, retro_vpac_223, retro_vpac_490, retro_vpac_95,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_688 64.15 60.48
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2. retro_ecab_806 81.72 55.09
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Download FASTA sequences of all ENSECAG00000013618 retrocopies