Parental gene:

ATP5J, ENSEEUG00000011228

Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 [Source:HGNC Symbol;Acc:847]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5450:101282..104353(-)


>ENSEEUG00000011228
ATGAATCTTCAGAGGCTCTTCCGGTTCTCCTCACTCGTTCGGTCTGCGGTCTCTGTCCACTTGAGGAGAAACATCGGCGT
TACAGCAGTGGCATTTAATAAGGAACTTGATCCTATACAGAAGCTCTTTGTGGACAAGATTAGAGAATACAGAACTAAGC
GACAGTCATCTGCAGGACCAGTGGATGTTGGTCCAGAGTATCAACAAGATGTGGACAGGGAGCTTTTTAAGCTTAAGCAA
ATGTTTGGCAAATCAGACATGAATACCTTCCCTACCTTCACATTTGAAGATCCCAAATTTGAAGTCCATGACAAACCCCA
GTCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 53 .98 RPM
SRP017611_kidney 129 .96 RPM
SRP017611_liver 55 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017167 ortholog_one2one 1 retrogene
retro_amel_1858,
Bos taurus ENSBTAG00000000605 ortholog_one2one 1 retrogene
retro_btau_1653,
Canis familiaris ENSCAFG00000024922 ortholog_one2one 2 retrogenes
retro_cfam_1664, retro_cfam_1993,
Callithrix jacchus ENSCJAG00000013803 ortholog_one2one 3 retrogenes
retro_cjac_1531, retro_cjac_2559, retro_cjac_665,
Equus caballus ENSECAG00000017858 ortholog_one2one 2 retrogenes
retro_ecab_548, retro_ecab_644,
Echinops telfairi ENSETEG00000006438 ortholog_one2one 4 retrogenes
retro_etel_1847, retro_etel_2218, retro_etel_468, retro_etel_832,
Felis catus ENSFCAG00000029970 ortholog_one2one 1 retrogene
retro_fcat_1451,
Homo sapiens ENSG00000154723 ortholog_one2one 3 retrogenes
retro_hsap_2548, retro_hsap_3990, retro_hsap_4920,
Gorilla gorilla ENSGGOG00000008265 ortholog_one2one 2 retrogenes
retro_ggor_1593, retro_ggor_2678,
Myotis lucifugus ENSMLUG00000015988 ortholog_one2one 1 retrogene
retro_mluc_1266,
Macaca mulatta ENSMMUG00000008725 ortholog_one2one 1 retrogene
retro_mmul_2306,
Monodelphis domestica ENSMODG00000021011 ortholog_one2one 1 retrogene
retro_mdom_1010,
Mustela putorius furo ENSMPUG00000001001 ortholog_one2one 2 retrogenes
retro_mputfur_1573, retro_mputfur_1582,
Nomascus leucogenys ENSNLEG00000002412 ortholog_one2one 1 retrogene
retro_nleu_539,
Oryctolagus cuniculus ENSOCUG00000006681 ortholog_one2one 5 retrogenes
retro_ocun_1517, retro_ocun_1888, retro_ocun_326, retro_ocun_419, retro_ocun_789,
Pongo abelii ENSPPYG00000011305 ortholog_one2one 2 retrogenes
retro_pabe_1874, retro_pabe_1875,
Pan troglodytes ENSPTRG00000013809 ortholog_one2one 3 retrogenes
retro_ptro_1485, retro_ptro_2708, retro_ptro_3312,
Sorex araneus ENSSARG00000000742 ortholog_one2one 3 retrogenes
retro_sara_165, retro_sara_225, retro_sara_501,
Sus scrofa ENSSSCG00000022586 ortholog_one2many 1 retrogene
retro_sscr_896,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_693 80.22 84.26
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2. retro_eeur_695 80.22 84.26
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Download FASTA sequences of all ENSEEUG00000011228 retrocopies