Parental gene:

MAP1LC3A, ENSFCAG00000022040

Aliases:None
Description:microtubule-associated protein 1 light chain 3 alpha [Source:HGNC Symbol;Acc:6838]
Organism:Cat (Felis catus)
Coordinates:A3:24398182..24399185(-)


>ENSFCAG00000022040
ATGCCCTCAGACCGGCCTTTCAAGCAGCGGCGGACCTTCGCCGACCGCTGTAAGGAGGTGCAGCAGATCCGCGACCAGCA
CCCCAGCAAGATCCCGGTGATCATCGAGCGCTACAAGGGTGAGAAGCAGCTGCCAGTCCTGGACAAGACCAAGTTCCTGG
TGCCAGACCATGTCAACATGAGCGAGTTGGTCAAGATCATCCGCCACCCCAGGCGCCGCCTGCAGCTGAACCCCACGCAG
GCCTTCTTCCTGCTGGTGAACCAGCACAGCATGGTGAGCGTGTCTACGCCCATCGCCGACATCTACGAGCAGGAGAAGGA
TGACGATGGCTTCCTCTACATGGTCTACGCCTCCCAGGAAACCTTCGGCTTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 37 .42 RPM
SRP017611_kidney 16 .08 RPM
SRP017611_liver 4 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000012407 ortholog_one2one 1 retrogene
retro_etel_1766,
Felis catus ENSFCAG00000001938 within_species_paralog 4 retrogenes
retro_fcat_1727, retro_fcat_1874, retro_fcat_340, retro_fcat_884,
Monodelphis domestica ENSMODG00000002694 ortholog_one2one 1 retrogene
retro_mdom_1256,
Mustela putorius furo ENSMPUG00000017814 ortholog_one2one 1 retrogene
retro_mputfur_1049,
Ictidomys tridecemlineatus ENSSTOG00000006158 ortholog_one2one 2 retrogenes
retro_itri_287, retro_itri_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_1634 67.14 54.84
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Download FASTA sequences of all ENSFCAG00000022040 retrocopies