Parental gene:

PDCD2, ENSG00000071994

Aliases:PDCD2, RP8, ZMYND7
Description:programmed cell death 2 [Source:HGNC Symbol;Acc:8762]
Organism:Human (Homo sapiens)
Coordinates:6:170884382..170893780(-)


>ENSG00000071994
ATGGCTGCCGCCGGGGCCAGGCCTGTGGAGCTGGGCTTCGCCGAGTCGGCGCCGGCGTGGCGACTGCGCAGCGAGCAGTT
CCCCAGCAAGGTGGGCGGGCGGCCGGCATGGCTGGGCGCGGCCGGGCTGCCGGGGCCCCAGGCCCTGGCCTGCGAGCTGT
GCGGCCGCCCGCTCTCCTTCCTGCTGCAGGTGTATGCGCCGCTGCCTGGCCGCCCGGACGCCTTCCACCGCTGCATCTTC
CTCTTCTGCTGCCGCGAGCAGCCGTGCTGTGCCGGCCTGCGAGTTTTTAGGAATCAACTACCCAGGAAAAACGATTTTTA
CTCATATGAGCCACCTTCTGAGAATCCTCCCCCAGAAACAGGAGAATCAGTGTGTCTCCAGCTTAAGTCTGGTGCTCATC
TCTGCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCACAAAGCATATTACTGCAGCAAGGAGCATCAG
ACCCTAGACTGGAGATTGGGACATAAGCAGGCTTGTGCACAACCAGATCATCTGGACCATATAATTCCAGACCACAACTT
CCTTTTTCCAGAATTTGAAATTGTAATAGAAACAGAAGATGAGATTATGCCTGAGGTTGTGGAAAAGGAAGATTACTCAG
AGATTATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTGGATTCCATGGCAAAACATGAATCCAGGGAAGATAAAATT
TTTCAGAAGTTTAAAACTCAGATAGCCCTTGAACCAGAACAGATTCTTAGATATGGCAGAGGTATTGCCCCCATCTGGAT
TTCTGGTGAAAATATTCCTCAAGAAAAGGATATTCCAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATTCCAGGTCA
TGCCTCAGCTCCTAAACTACCTGAAGGCTGACAGACTGGGCAAGAGCATTGACTGGGGCATCCTGGCTGTCTTCACCTGT
GCTGAGAGCTGCAGCTTGGGTACTGGCTATACAGAAGAATTTGTGTGGAAGCAGGATGTAACAGATACACCGTAA

Library Parental gene expression (RPM)
bodymap2_liver 27 .48 RPM
bodymap2_lung 24 .67 RPM
bodymap2_breast 38 .37 RPM
bodymap2_adipose 32 .40 RPM
bodymap2_adrenal 61 .27 RPM
bodymap2_skeletal_muscle 26 .95 RPM
bodymap2_thyroid 56 .59 RPM
bodymap2_prostate 40 .77 RPM
bodymap2_colon 39 .85 RPM
bodymap2_testis 50 .64 RPM
bodymap2_brain 25 .08 RPM
bodymap2_heart 23 .57 RPM
bodymap2_white_blood_cells 57 .49 RPM
bodymap2_lymph_node 51 .53 RPM
bodymap2_ovary 58 .39 RPM
bodymap2_kidney 50 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017075 ortholog_one2one 2 retrogenes
retro_amel_1329, retro_amel_1404,
Callithrix jacchus ENSCJAG00000020634 ortholog_one2many 1 retrogene
retro_cjac_3946,
Equus caballus ENSECAG00000016819 ortholog_one2one 1 retrogene
retro_ecab_533,
Felis catus ENSFCAG00000007037 ortholog_one2one 2 retrogenes
retro_fcat_305, retro_fcat_749,
Gorilla gorilla ENSGGOG00000028229 ortholog_one2one 2 retrogenes
retro_ggor_2876, retro_ggor_899,
Microcebus murinus ENSMICG00000007474 ortholog_one2one 1 retrogene
retro_mmur_108,
Macaca mulatta ENSMMUG00000019916 ortholog_one2many 1 retrogene
retro_mmul_1137,
Mustela putorius furo ENSMPUG00000007227 ortholog_one2one 2 retrogenes
retro_mputfur_621, retro_mputfur_707,
Nomascus leucogenys ENSNLEG00000000295 ortholog_one2one 2 retrogenes
retro_nleu_1458, retro_nleu_2633,
Otolemur garnettii ENSOGAG00000014002 ortholog_one2one 2 retrogenes
retro_ogar_2090, retro_ogar_2288,
Pongo abelii ENSPPYG00000017193 ortholog_one2many 2 retrogenes
retro_pabe_3505, retro_pabe_958,
Pan troglodytes ENSPTRG00000018828 ortholog_one2one 2 retrogenes
retro_ptro_2915, retro_ptro_788,
Pteropus vampyrus ENSPVAG00000010822 ortholog_one2one 1 retrogene
retro_pvam_1150,
Sus scrofa ENSSSCG00000025312 ortholog_one2many 2 retrogenes
retro_sscr_303, retro_sscr_450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4305 84.15 81.40
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Download FASTA sequences of all ENSG00000071994 retrocopies