Parental gene:

ENSCJAG00000020634

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:171521708..171612409(-)


>ENSCJAG00000020634
ATGGCTGCCTCCCGGGCGGGACATGTGGAGCTGGGCTTCGCCGAGTTGGCGCCGGCGTGGCGACTGCGCAGCGAGCAGTT
CCCCAGCAAGGTAGGCGGGCGGCCCGCGTGGCTGGGCGCGTCCGGGCTGCCGGGGCCCGGGGCCCTGGCCTGCGCGCTGT
GCGGCCGCCCGCTCTCCTTCCTGCTGCAGGTGTACGCGCCGCTGCCCGGCCGCGCCGACGCCTTCCACCGCGGCATCTTC
CTTTTCTGCTGCCGCGAGCCGCCGTGCTGCGCCGGCCTGCGAGTTTTTAGGAATCAGCTACCCAGGAAAAATGATTTTTA
TTCATATGAGCCACCTTCTGAGAATCCTTCCCCAGAAACCGAATCAGTGTGTCTCCAGCTTAAGTCTGGTGCTCATCTAT
GCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCACAAAGTGTATTACTGTAGCAAGGAGCATCAGACC
CTAGACTGGAGACTGGGACATAAGCAGGCTTATGCACAACCAGATCATTTGGACCATAGAATTCCAGACCACAACTTCCT
TTTTCCAGAATTCGAAATTGTAATAGAAACAGAAGACGAAATATTCCCTGAGGTTGTGGAAAAGGAAGATTACTCAGAGA
TTATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTGGATTCCATGGCAAAACATGAATCCAGGGAAGATGAAATTTTT
CAGAAGTTTAAAACTCAGATAGCCCTTGAACCAGAACAGATTCTCAGATATGGCAGAGGTATTGCCCCCATCTGGATTTC
TGGTGAAAATATTCCTCAAGAAAAGGATATTCCGGATTGCCCCTGTGGTGCCAAGAGAATATTTGAATTCCAGGTCATGC
CTCAGCTCCTAAACTACCTGAAGGCTGACAGACTGGGCAAGAGCATTGACTGGGGCATCCTGGCTGTCTTCACCTGTGCT
GAGAGCTGCAGCTTGGGTACTGGCTATACAGAAGAATTTGTGTGGAAGCAGGATGTAACAAATACACCGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 10 .92 RPM
SRP051959_skeletal_muscle 10 .07 RPM
SRP051959_lymph_node 13 .26 RPM
SRP051959_lung 9 .63 RPM
SRP051959_liver 12 .24 RPM
SRP051959_kidney 10 .32 RPM
SRP051959_heart 8 .95 RPM
SRP051959_colon 9 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017075 ortholog_one2many 2 retrogenes
retro_amel_1329, retro_amel_1404,
Cavia porcellus ENSCPOG00000002920 possible_ortholog 1 retrogene
retro_cpor_168,
Equus caballus ENSECAG00000016819 ortholog_one2many 1 retrogene
retro_ecab_533,
Felis catus ENSFCAG00000007037 ortholog_one2many 2 retrogenes
retro_fcat_305, retro_fcat_749,
Homo sapiens ENSG00000071994 ortholog_one2many 1 retrogene
retro_hsap_4305,
Gorilla gorilla ENSGGOG00000028229 ortholog_one2many 2 retrogenes
retro_ggor_2876, retro_ggor_899,
Microcebus murinus ENSMICG00000007474 ortholog_one2many 1 retrogene
retro_mmur_108,
Macaca mulatta ENSMMUG00000019916 ortholog_many2many 1 retrogene
retro_mmul_1137,
Mustela putorius furo ENSMPUG00000007227 ortholog_one2many 2 retrogenes
retro_mputfur_621, retro_mputfur_707,
Nomascus leucogenys ENSNLEG00000000295 ortholog_one2many 2 retrogenes
retro_nleu_1458, retro_nleu_2633,
Otolemur garnettii ENSOGAG00000014002 ortholog_one2many 2 retrogenes
retro_ogar_2090, retro_ogar_2288,
Pongo abelii ENSPPYG00000017193 ortholog_many2many 2 retrogenes
retro_pabe_3505, retro_pabe_958,
Pan troglodytes ENSPTRG00000018828 ortholog_one2many 2 retrogenes
retro_ptro_2915, retro_ptro_788,
Pteropus vampyrus ENSPVAG00000010822 ortholog_one2many 1 retrogene
retro_pvam_1150,
Sus scrofa ENSSSCG00000025312 ortholog_many2many 2 retrogenes
retro_sscr_303, retro_sscr_450,
Ictidomys tridecemlineatus ENSSTOG00000022768 possible_ortholog 2 retrogenes
retro_itri_1348, retro_itri_1635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3946 90.23 50.73
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Download FASTA sequences of all ENSCJAG00000020634 retrocopies