Parental gene:

PDCD2, ENSGGOG00000028229

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:171659871..171667151(-)


>ENSGGOG00000028229
ATGGCTGCCGCTGGGGCCAGACCTGTGGAGCTGGGCTTCGCCGAGTCGGCGCCGGCGTGGCGACTGCGCAGCGAGCAGTT
CCCCAGCAAGGTGGGCGGGCGGCCGGCGTGGCTGGGCGCGGCCGGGCTGCCGGGCCCCCGGGCCCTGGCCTGCGAGCTGT
GCGGCCGCCCGCTCTCCTTCCTGCTGCAGGTGTACGCGCCGCTGCCCGGCCGCCCGGACGCCTTCCACCGCTGCATCTTC
CTCTTCTGCTGCCGCGAGCAGCCGTGCTGTGCCGGCCTGCGGGTTTTTAGGAATCAACTACCCAGGAAAAACGATTTTTA
CTCATATGAGCCACCTTCTGAGAATCCTCCCCCAGAAACAGGAGAATCAGTGTGTCTCCAGCTTAAGTCTGGTGCTCATC
TCTGCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCAGATGCCACAAAGCATATTACTGCAGCAAGGAGCATCAG
ACCCTAGACTGGAGACTGGGACATAAGCAGGCTTGTGCACAACCAGATCATCTGGACCATATAATTCCAGACCACAACTT
CCTTTTTCCAGAATTTGAAATTGTAATAGAAACAGAAGATGAGATTATGCCTGAGGTTGTGGAAAAGGAAGATTACTCAG
AGATTATAGGGAGCATGGGTGAAGCACTTGAGGAAGAACTGGATTCCATGGCAAAACATGAATCCAGGGAAGATAAAATT
TTTCAGAAGTTTAAAACTCAGATAGCCCTTGAACCAGAACAGATTCTTAGATATGGCAGAGGTATTGCCCCCATCTGGAT
TTCTGGTGAAAATATTCCTCAAGAAAAGGATATTCCAGATTGCCCCTGTGGTGCCAAGAGAATATTGGAATTCCAGGTCA
TGCCTCAGCTCCTAAACTACCTGAAGGCTGACAGACTGGGCAAGAGCATTGACTGGGGCATCCTGGCAGTCTTCACCTGT
GCTGAGAGCTGCAGCTTGGGTACTGGCTATACAGAAGAATTTGTGTGGAAGCAGGATGTAACAGATACACCGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 7 .48 RPM
SRP007412_cerebellum 8 .08 RPM
SRP007412_heart 4 .07 RPM
SRP007412_kidney 16 .44 RPM
SRP007412_liver 11 .98 RPM
SRP007412_testis 7 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017075 ortholog_one2one 2 retrogenes
retro_amel_1329, retro_amel_1404,
Callithrix jacchus ENSCJAG00000020634 ortholog_one2many 1 retrogene
retro_cjac_3946,
Equus caballus ENSECAG00000016819 ortholog_one2one 1 retrogene
retro_ecab_533,
Felis catus ENSFCAG00000007037 ortholog_one2one 2 retrogenes
retro_fcat_305, retro_fcat_749,
Homo sapiens ENSG00000071994 ortholog_one2one 1 retrogene
retro_hsap_4305,
Microcebus murinus ENSMICG00000007474 ortholog_one2one 1 retrogene
retro_mmur_108,
Macaca mulatta ENSMMUG00000019916 ortholog_one2many 1 retrogene
retro_mmul_1137,
Mustela putorius furo ENSMPUG00000007227 ortholog_one2one 2 retrogenes
retro_mputfur_621, retro_mputfur_707,
Nomascus leucogenys ENSNLEG00000000295 ortholog_one2one 2 retrogenes
retro_nleu_1458, retro_nleu_2633,
Otolemur garnettii ENSOGAG00000014002 ortholog_one2one 2 retrogenes
retro_ogar_2090, retro_ogar_2288,
Pongo abelii ENSPPYG00000017193 ortholog_one2many 2 retrogenes
retro_pabe_3505, retro_pabe_958,
Pan troglodytes ENSPTRG00000018828 ortholog_one2one 2 retrogenes
retro_ptro_2915, retro_ptro_788,
Pteropus vampyrus ENSPVAG00000010822 ortholog_one2one 1 retrogene
retro_pvam_1150,
Sus scrofa ENSSSCG00000025312 ortholog_one2many 2 retrogenes
retro_sscr_303, retro_sscr_450,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_899 83.15 51.45
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2. retro_ggor_2876 84.39 86.34
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Download FASTA sequences of all ENSGGOG00000028229 retrocopies