Parental gene: | IMPDH1, ENSG00000106348 |
| Aliases: | IMPDH1, IMPD, IMPD1, LCA11, RP10, sWSS2608 |
| Description: | IMP (inosine 5'-monophosphate) dehydrogenase 1 [Source:HGNC Symbol;Acc:6052] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 7:128032330..128050306(-) |
>ENSG00000106348
ATGGAGGGGCCACTCACTCCACCACCGCTGCAGGGAGGCGGAGCCGCCGCTGTTCCGGAGCCCGGAGCCCGGCAACACCC
GGGACACGAGACGGCGGCGCAGCGGTACAGCGCCCGACTGCTGCAGGCCGGCTACGAGCCCGAGAGCCCTAGATTGGACC
TCGCTACACACCCGACGACACCCCGTTCAGAACTATCTTCAGTGGTCTTACTGGCAGGTGTTGGTGTCCAGATGGATCGC
CTTCGCAGGGCTAGCATGGCGGACTACCTGATCAGCGGCGGCACCGGCTACGTGCCCGAGGATGGGCTCACCGCGCAGCA
GCTCTTCGCCAGCGCCGACGGCCTCACCTACAACGACTTCCTGATTCTCCCAGGATTCATAGACTTCATAGCTGATGAGG
TGGACCTGACCTCAGCCCTGACCCGGAAGATCACGCTGAAGACGCCACTGATCTCCTCCCCCATGGACACTGTGACAGAG
GCTGACATGGCCATTGCCATGGCTCTGATGGGAGGTATTGGTTTCATTCACCACAACTGCACCCCAGAGTTCCAGGCCAA
CGAGGTGCGGAAGGTCAAGAAGTTTGAACAGGGCTTCATCACGGACCCTGTGGTGCTGAGCCCCTCGCACACTGTGGGCG
ATGTGCTGGAGGCCAAGATGCGGCATGGCTTCTCTGGCATCCCCATCACTGAGACGGGCACCATGGGCAGCAAGCTGGTG
GGCATCGTCACCTCCCGAGACATCGACTTTCTTGCTGAGAAGGACCACACCACCCTCCTCAGTGAGGTGATGACGCCAAG
GATTGAACTGGTGGTGGCTCCAGCAGGTGTGACGTTGAAAGAGGCAAATGAGATCCTGCAGCGTAGCAAGAAAGGGAAGC
TGCCTATCGTCAATGATTGCGATGAGCTGGTGGCCATCATCGCCCGCACCGACCTGAAGAAGAACCGAGACTACCCTCTG
GCCTCCAAGGATTCCCAGAAGCAGCTGCTCTGTGGGGCAGCTGTGGGCACCCGTGAGGATGACAAATACCGTCTGGACCT
GCTCACCCAGGCGGGCGTCGACGTCATAGTCTTGGACTCGTCCCAAGGGAATTCGGTGTATCAGATCGCCATGGTGCATT
ACATCAAACAGAAGTACCCCCACCTCCAGGTGATTGGGGGGAACGTGGTGACAGCAGCCCAGGCCAAGAACCTGATTGAT
GCTGGTGTGGACGGGCTGCGCGTGGGCATGGGCTGCGGCTCCATCTGCATCACCCAGGAAGTGATGGCCTGTGGTCGGCC
CCAGGGCACTGCTGTGTACAAGGTGGCTGAGTATGCCCGGCGCTTTGGTGTGCCCATCATAGCCGATGGCGGCATCCAGA
CCGTGGGACACGTGGTCAAGGCCCTGGCCCTTGGAGCCTCCACAGTGATGATGGGCTCCCTGCTGGCCGCCACTACGGAG
GCCCCTGGCGAGTACTTCTTCTCAGACGGGGTGCGGCTCAAGAAGTACCGGGGCATGGGCTCACTGGATGCCATGGAGAA
GAGCAGCAGCAGCCAGAAACGATACTTCAGCGAGGGGGATAAAGTGAAGATCGCGCAGGGTGTCTCGGGCTCCATCCAGG
ACAAAGGATCCATTCAGAAGTTCGTGCCCTACCTCATAGCAGGCATCCAACACGGCTGCCAGGATATCGGGGCCCGCAGC
CTGTCTGTCCTTCGGTCCATGATGTACTCAGGAGAGCTCAAGTTTGAGAAGCGGACCATGTCGGCCCAGATTGAGGGTGG
TGTCCATGGCCTGCACTCTTACGAAAAGCGGCTGTACTGA
ATGGAGGGGCCACTCACTCCACCACCGCTGCAGGGAGGCGGAGCCGCCGCTGTTCCGGAGCCCGGAGCCCGGCAACACCC
GGGACACGAGACGGCGGCGCAGCGGTACAGCGCCCGACTGCTGCAGGCCGGCTACGAGCCCGAGAGCCCTAGATTGGACC
TCGCTACACACCCGACGACACCCCGTTCAGAACTATCTTCAGTGGTCTTACTGGCAGGTGTTGGTGTCCAGATGGATCGC
CTTCGCAGGGCTAGCATGGCGGACTACCTGATCAGCGGCGGCACCGGCTACGTGCCCGAGGATGGGCTCACCGCGCAGCA
GCTCTTCGCCAGCGCCGACGGCCTCACCTACAACGACTTCCTGATTCTCCCAGGATTCATAGACTTCATAGCTGATGAGG
TGGACCTGACCTCAGCCCTGACCCGGAAGATCACGCTGAAGACGCCACTGATCTCCTCCCCCATGGACACTGTGACAGAG
GCTGACATGGCCATTGCCATGGCTCTGATGGGAGGTATTGGTTTCATTCACCACAACTGCACCCCAGAGTTCCAGGCCAA
CGAGGTGCGGAAGGTCAAGAAGTTTGAACAGGGCTTCATCACGGACCCTGTGGTGCTGAGCCCCTCGCACACTGTGGGCG
ATGTGCTGGAGGCCAAGATGCGGCATGGCTTCTCTGGCATCCCCATCACTGAGACGGGCACCATGGGCAGCAAGCTGGTG
GGCATCGTCACCTCCCGAGACATCGACTTTCTTGCTGAGAAGGACCACACCACCCTCCTCAGTGAGGTGATGACGCCAAG
GATTGAACTGGTGGTGGCTCCAGCAGGTGTGACGTTGAAAGAGGCAAATGAGATCCTGCAGCGTAGCAAGAAAGGGAAGC
TGCCTATCGTCAATGATTGCGATGAGCTGGTGGCCATCATCGCCCGCACCGACCTGAAGAAGAACCGAGACTACCCTCTG
GCCTCCAAGGATTCCCAGAAGCAGCTGCTCTGTGGGGCAGCTGTGGGCACCCGTGAGGATGACAAATACCGTCTGGACCT
GCTCACCCAGGCGGGCGTCGACGTCATAGTCTTGGACTCGTCCCAAGGGAATTCGGTGTATCAGATCGCCATGGTGCATT
ACATCAAACAGAAGTACCCCCACCTCCAGGTGATTGGGGGGAACGTGGTGACAGCAGCCCAGGCCAAGAACCTGATTGAT
GCTGGTGTGGACGGGCTGCGCGTGGGCATGGGCTGCGGCTCCATCTGCATCACCCAGGAAGTGATGGCCTGTGGTCGGCC
CCAGGGCACTGCTGTGTACAAGGTGGCTGAGTATGCCCGGCGCTTTGGTGTGCCCATCATAGCCGATGGCGGCATCCAGA
CCGTGGGACACGTGGTCAAGGCCCTGGCCCTTGGAGCCTCCACAGTGATGATGGGCTCCCTGCTGGCCGCCACTACGGAG
GCCCCTGGCGAGTACTTCTTCTCAGACGGGGTGCGGCTCAAGAAGTACCGGGGCATGGGCTCACTGGATGCCATGGAGAA
GAGCAGCAGCAGCCAGAAACGATACTTCAGCGAGGGGGATAAAGTGAAGATCGCGCAGGGTGTCTCGGGCTCCATCCAGG
ACAAAGGATCCATTCAGAAGTTCGTGCCCTACCTCATAGCAGGCATCCAACACGGCTGCCAGGATATCGGGGCCCGCAGC
CTGTCTGTCCTTCGGTCCATGATGTACTCAGGAGAGCTCAAGTTTGAGAAGCGGACCATGTCGGCCCAGATTGAGGGTGG
TGTCCATGGCCTGCACTCTTACGAAAAGCGGCTGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 2 .60 RPM |
| bodymap2_lung | 18 .14 RPM |
| bodymap2_breast | 24 .55 RPM |
| bodymap2_adipose | 54 .51 RPM |
| bodymap2_adrenal | 33 .80 RPM |
| bodymap2_skeletal_muscle | 1 .29 RPM |
| bodymap2_thyroid | 8 .32 RPM |
| bodymap2_prostate | 22 .01 RPM |
| bodymap2_colon | 23 .28 RPM |
| bodymap2_testis | 17 .72 RPM |
| bodymap2_brain | 6 .45 RPM |
| bodymap2_heart | 11 .10 RPM |
| bodymap2_white_blood_cells | 90 .88 RPM |
| bodymap2_lymph_node | 42 .47 RPM |
| bodymap2_ovary | 24 .71 RPM |
| bodymap2_kidney | 12 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000017770 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000178035 | within_species_paralog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000003963 | ortholog_one2one | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000016082 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000014509 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012341 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000017976 | ortholog_one2one | 7 retrogenes | |
| Pan troglodytes | ENSPTRG00000019660 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2360 | 79.83 | 60.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2368 | 86.54 | 52.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2608 | 84.95 | 52.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_3797 | 86.02 | 87.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_4005 | 86.85 | 87.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_4247 | 88.80 | 91.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_4808 | 90.89 | 91.47 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000106348 retrocopies