RetrogeneDB ID: | retro_meug_2095 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold8990:19940..20902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMPDH1 | ||
Ensembl ID: | ENSMEUG00000016082 | ||
Aliases: | None | ||
Description: | IMP (inosine 5'-monophosphate) dehydrogenase 1 [Source:HGNC Symbol;Acc:6052] |
Percent Identity: | 68.52 % |
Parental protein coverage: | 62.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MADYLISGGTGYVPEDGLTAQQL-FAIADGLTYNDFLILPGFIDFTADEVDLTSALTRKITLKTPLISSP |
M.DYLIS..T.Y.P.DGL..QQL.F...DGLTYNDFLILPG.IDFTAD..DL.SALT.KIT.KT.L.S.P | |
Retrocopy | MEDYLISCSTCYIPHDGLMVQQL<FNCGDGLTYNDFLILPGYIDFTADQLDLSSALTKKITFKTHLASFP |
Parental | MDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKKFEQGFITDPVVLSPSHT-VGDVLEAKMRHG |
MDTVT.A.M...M.L.GGIGFIHHNCTPEF.A..V.KVKK.EQ.FITDPVVLSP....V.DV.EAK.RHG | |
Retrocopy | MDTVTKAEMVTTMVLTGGIGFIHHNCTPEFKAHKVFKVKKYEQDFITDPVVLSPQRW>VRDVFEAKARHG |
Parental | FSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHATYLSEVMTSRNDLVVAPAGVTLKEANEILQRSKKGK |
F.GI.IT..G..GS.LVGI..S.DIDFL.E..H...L.E.MT...DLVVAPAG.TLKEANEILQ.SKKGK | |
Retrocopy | FFGILITDNGKVGSHLVGIISSHDIDFLKEEEHDHFLGEIMTRWEDLVVAPAGLTLKEANEILQWSKKGK |
Parental | LPIVNDSDELVAIIARTDLKKNRDYPLASKDAHKQLLCGAAVGTREDDKYRLDLLTQAGADVIVLDSSQG |
LPIVN...EL.AII....LKKN.DYPLA.KD..KQ.L.GAA..T.E..KYRLDLL..AG..V..LDSSQG | |
Retrocopy | LPIVNEGNELGAIITCKNLKKNWDYPLAAKDTKKQPLYGAAISTHENGKYRLDLLA*AGVNVVMLDSSQG |
Parental | NS-VYQIAMVHYIKQKYPQLQVIGGNVVTAAQAKNLIDAGVDGL |
NS...QI.M..YIK.KY..LQVIGGNVVTAAQAK.LI..GVD.L | |
Retrocopy | NS<IFQINMIKYIKEKYNNLQVIGGNVVTAAQAKHLIVVGVDTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017770 | 1 retrocopy | |
Homo sapiens | ENSG00000106348 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003963 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000007895 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016082 | 2 retrocopies |
retro_meug_2095 , retro_meug_542,
|
Macaca mulatta | ENSMMUG00000014509 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012341 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017976 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000019660 | 7 retrocopies |