Parental gene: | HMGA1, ENSG00000137309 |
| Aliases: | HMGA1, HMG-R, HMGA1A, HMGIY |
| Description: | high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:5010] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 6:34204649..34214008(+) |
>ENSG00000137309
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGG
CAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACAC
CTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGA
AGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGGAGGAGCA
GTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 29 .80 RPM |
| bodymap2_adrenal | 22 .37 RPM |
| bodymap2_brain | 13 .57 RPM |
| bodymap2_breast | 16 .17 RPM |
| bodymap2_colon | 21 .81 RPM |
| bodymap2_heart | 15 .71 RPM |
| bodymap2_kidney | 8 .36 RPM |
| bodymap2_liver | 5 .37 RPM |
| bodymap2_lung | 68 .62 RPM |
| bodymap2_lymph_node | 49 .23 RPM |
| bodymap2_ovary | 5 .96 RPM |
| bodymap2_prostate | 19 .02 RPM |
| bodymap2_skeletal_muscle | 99 .76 RPM |
| bodymap2_testis | 98 .55 RPM |
| bodymap2_thyroid | 32 .11 RPM |
| bodymap2_white_blood_cells | 50 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001061 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015226 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010085 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019529 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000046711 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000008303 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000029838 | possible_ortholog | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000040884 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000488 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_695 | 57.30 | 90.62 | Please wait, loading  |
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| 2. | retro_hsap_1175 | 86.60 | 100.00 | Please wait, loading |
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| 3. | retro_hsap_2277 | 93.46 | 100.00 | Please wait, loading |
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| 4. | retro_hsap_4663 | 76.10 | 82.01 | Please wait, loading |
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Download FASTA sequences of all ENSG00000137309 retrocopies