Parental gene:

TMEM183A, ENSG00000163444

Aliases:TMEM183A, C1orf37
Description:transmembrane protein 183A [Source:HGNC Symbol;Acc:20173]
Organism:Human (Homo sapiens)
Coordinates:1:202976513..202993976(+)


>ENSG00000163444
ATGGCCCGGGGGCCCGGCCCGCTAGGCAGGCCTCGCCCCGATACGGTCGCCATGCCCAAGAGAGGAAAGCGACTCAAGTT
CCGGGCCCACGACGCCTGCTCCGGCCGAGTGACCGTGGCGGATTACGCCAACTCGGATCCGGCGGTCGTGAGGTCTGGAC
GAGTCAAGAAAGCCGTAGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTTTGTGGCTTGGAAGCCTCTCAGGTTCCTGCA
GAGGAAGCTCTTTCTGGGGCTGGTGAGCCCTGTGACATCATCGACAGCAGTGATGAGATGGATGCCCAGGAGGAAAGCAT
CCATGAGAGAACTGTCTCCAGAAAAAAGAAAAGCAAGAGACACAAAGAAGAACTGGACGGGGCTGGAGGAGAAGAGTATC
CCATGGATATTTGGCTATTGCTGGCCTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCC
TGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCCCTGCCTTTGCG
TCTGCGACCAGAGTCAATGGAGAAGCTGCGCTGTCTCCGGGCTTGTGTGATCCGATCTCTGTACCATATGTATGAGCCAT
TTGCTGCTCGAATCTCCAAGAATCCAGCCATTCCAGAAAGCACCCCCAGCACATTAAAGAATTCCAAATGCTTACTTTTC
TGGTGCAGAAAGATTGTTGGGAACAGACAGGAACCAATGTGGGAATTCAACTTCAAGTTCAAAAAACAGTCCCCTAGGTT
AAAGAGCAAGTGTACAGGAGGATTGCAGCCTCCCGTTCAGTACGAAGATGTTCATACCAATCCAGACCAGGACTGCTGCC
TACTGCAGGTCACCACCCTCAATTTCATCTTTATTCCGATTGTCATGGGAATGATATTTACTCTGTTTACTATCAATGTG
AGCACGGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCCCCTGTCCATGGTGGTCGGAAACTGCGCAGTGA
ACAGGGTGTGCAAGTCATCCTGGACCCAGTGCACAGCGTTCGGCTCTTTGACTGGTGGCATCCTCAGTACCCATTCTCCC
TGAGAGCGTAG

Library Parental gene expression (RPM)
bodymap2_adipose 24 .05 RPM
bodymap2_adrenal 36 .11 RPM
bodymap2_brain 48 .92 RPM
bodymap2_breast 28 .04 RPM
bodymap2_colon 40 .28 RPM
bodymap2_heart 11 .34 RPM
bodymap2_kidney 34 .41 RPM
bodymap2_liver 15 .99 RPM
bodymap2_lung 30 .98 RPM
bodymap2_lymph_node 39 .11 RPM
bodymap2_ovary 33 .54 RPM
bodymap2_prostate 42 .12 RPM
bodymap2_skeletal_muscle 7 .78 RPM
bodymap2_testis 42 .34 RPM
bodymap2_thyroid 38 .10 RPM
bodymap2_white_blood_cells 40 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000008318 possible_ortholog 1 retrogene
retro_etel_1835,
Felis catus ENSFCAG00000013106 ortholog_one2many 1 retrogene
retro_fcat_3,
Gorilla gorilla ENSGGOG00000009834 ortholog_one2one 2 retrogenes
retro_ggor_1358, retro_ggor_2533,
Loxodonta africana ENSLAFG00000018443 ortholog_one2one 1 retrogene
retro_lafr_149,
Macaca mulatta ENSMMUG00000000801 ortholog_one2many 1 retrogene
retro_mmul_1532,
Nomascus leucogenys ENSNLEG00000018106 ortholog_one2one 2 retrogenes
retro_nleu_2541, retro_nleu_2663,
Otolemur garnettii ENSOGAG00000000911 ortholog_one2many 1 retrogene
retro_ogar_3209,
Pongo abelii ENSPPYG00000000340 ortholog_one2one 2 retrogenes
retro_pabe_1333, retro_pabe_2627,
Pan troglodytes ENSPTRG00000001864 ortholog_one2one 2 retrogenes
retro_ptro_1902, retro_ptro_2278,
Rattus norvegicus ENSRNOG00000003594 ortholog_one2one 2 retrogenes
retro_rnor_1954, retro_rnor_2386,
Sus scrofa ENSSSCG00000015473 ortholog_one2one 1 retrogene
retro_sscr_879,
Ictidomys tridecemlineatus ENSSTOG00000012466 ortholog_one2one 1 retrogene
retro_itri_421,
Tarsius syrichta ENSTSYG00000007009 ortholog_one2one 1 retrogene
retro_tsyr_717,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2808 60.91 57.71
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2. retro_hsap_2863 98.40 100.00
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3. retro_hsap_3157 93.36 55.85
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Download FASTA sequences of all ENSG00000163444 retrocopies