Parental gene:

CHM, ENSG00000188419

Aliases:CHM, DXS540, GGTA, HSD-32, REP-1, TCD
Description:choroideremia (Rab escort protein 1) [Source:HGNC Symbol;Acc:1940]
Organism:Human (Homo sapiens)
Coordinates:X:85116184..85302566(-)


>ENSG00000188419
ATGGCGGATACTCTCCCTTCGGAGTTTGATGTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCATTGCAGCTGCATG
TTCAAGAAGTGGCCGGAGAGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAG
GACTATTGTCCTGGCTAAAGGAATACCAGGAAAACAGTGACATTGTAAGTGACAGTCCAGTGTGGCAAGACCAGATCCTT
GAAAATGAAGAAGCCATTGCTCTTAGCAGGAAGGACAAAACTATTCAACATGTGGAAGTATTTTGTTATGCCAGTCAGGA
TTTGCATGAAGATGTCGAAGAAGCTGGTGCACTGCAGAAAAATCATGCTCTTGTGACATCTGCAAACTCCACAGAAGCTG
CAGATTCTGCCTTCCTGCCTACGGAGGATGAGTCATTAAGCACTATGAGCTGTGAAATGCTCACAGAACAAACTCCAAGC
AGCGATCCAGAGAATGCGCTAGAAGTAAATGGTGCTGAAGTGACAGGGGAAAAAGAAAACCATTGTGATGATAAAACTTG
TGTGCCATCAACTTCAGCAGAAGACATGAGTGAAAATGTGCCTATAGCAGAAGATACCACAGAGCAACCAAAGAAAAACA
GAATTACTTACTCACAAATTATTAAAGAAGGCAGGAGATTTAATATTGATTTAGTATCAAAGCTGCTGTATTCTCGAGGA
TTACTAATTGATCTTCTAATCAAATCTAATGTTAGTCGATATGCAGAGTTTAAAAATATTACCAGGATTCTTGCATTTCG
AGAAGGACGAGTGGAACAGGTTCCGTGTTCCAGAGCAGATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAA
TGCTAATGAAATTTCTTACATTTTGTATGGAATATGAGAAATATCCTGATGAATATAAAGGATATGAAGAGATCACATTT
TATGAATATTTAAAGACTCAAAAATTAACCCCCAACCTCCAATATATTGTCATGCATTCAATTGCAATGACATCAGAGAC
AGCCAGCAGCACCATAGATGGTCTCAAAGCTACCAAAAACTTTCTTCACTGTCTTGGGCGGTATGGCAACACTCCATTTT
TGTTTCCTTTATATGGCCAAGGAGAACTCCCCCAGTGTTTCTGCAGGATGTGTGCTGTGTTTGGTGGAATTTATTGTCTT
CGCCATTCAGTACAGTGCCTTGTAGTGGACAAAGAATCCAGAAAATGTAAAGCAATTATAGATCAGTTTGGTCAGAGAAT
AATCTCTGAGCATTTCCTCGTGGAGGACAGTTACTTTCCTGAGAACATGTGCTCACGTGTGCAATACAGGCAGATCTCCA
GGGCAGTGCTGATTACAGATAGATCTGTCCTAAAAACAGATTCAGATCAACAGATTTCCATTTTGACAGTGCCAGCAGAG
GAACCAGGAACTTTTGCTGTTCGGGTCATTGAGTTATGTTCTTCAACGATGACATGCATGAAAGGCACCTATTTGGTTCA
TTTGACTTGCACATCTTCTAAAACAGCAAGAGAAGATTTAGAATCAGTTGTGCAGAAATTGTTTGTTCCATATACTGAAA
TGGAGATAGAAAATGAACAAGTAGAAAAGCCAAGAATTCTGTGGGCTCTTTACTTCAATATGAGAGATTCGTCAGACATC
AGCAGGAGCTGTTATAATGATTTACCATCCAACGTTTATGTCTGCTCTGGCCCAGATTGTGGTTTAGGAAATGATAATGC
AGTCAAACAGGCTGAAACACTTTTCCAGGAAATCTGCCCCAATGAAGATTTCTGTCCCCCTCCACCAAATCCTGAAGACA
TTATCCTTGATGGAGACAGTTTACAGCCAGAGGCTTCAGAATCCAGTGCCATACCAGAGGCTAACTCGGAGACTTTCAAG
GAAAGCACAAACCTTGGAAACCTAGAGGAGTCCTCTGAATAA

Library Parental gene expression (RPM)
bodymap2_adipose 19 .92 RPM
bodymap2_adrenal 20 .69 RPM
bodymap2_brain 43 .88 RPM
bodymap2_breast 25 .10 RPM
bodymap2_colon 19 .28 RPM
bodymap2_heart 19 .73 RPM
bodymap2_kidney 40 .93 RPM
bodymap2_liver 11 .58 RPM
bodymap2_lung 20 .89 RPM
bodymap2_lymph_node 20 .92 RPM
bodymap2_ovary 24 .46 RPM
bodymap2_prostate 33 .15 RPM
bodymap2_skeletal_muscle 17 .71 RPM
bodymap2_testis 21 .21 RPM
bodymap2_thyroid 40 .69 RPM
bodymap2_white_blood_cells 38 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010190 ortholog_one2one 1 retrogene
retro_amel_733,
Bos taurus ENSBTAG00000009598 ortholog_one2one 1 retrogene
retro_btau_227,
Canis familiaris ENSCAFG00000017406 ortholog_one2one 1 retrogene
retro_cfam_1873,
Equus caballus ENSECAG00000019201 ortholog_one2one 1 retrogene
retro_ecab_36,
Felis catus ENSFCAG00000030652 ortholog_one2one 1 retrogene
retro_fcat_1744,
Gorilla gorilla ENSGGOG00000022912 ortholog_one2one 1 retrogene
retro_ggor_488,
Loxodonta africana ENSLAFG00000000523 ortholog_one2one 1 retrogene
retro_lafr_441,
Myotis lucifugus ENSMLUG00000011286 ortholog_one2one 1 retrogene
retro_mluc_138,
Macaca mulatta ENSMMUG00000016776 ortholog_one2one 1 retrogene
retro_mmul_460,
Monodelphis domestica ENSMODG00000014364 ortholog_many2many 1 retrogene
retro_mdom_1776,
Mustela putorius furo ENSMPUG00000001194 ortholog_one2one 1 retrogene
retro_mputfur_831,
Mus musculus ENSMUSG00000025531 ortholog_one2one 1 retrogene
retro_mmus_284,
Nomascus leucogenys ENSNLEG00000002762 ortholog_one2one 1 retrogene
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG00000012819 ortholog_one2one 1 retrogene
retro_ocun_893,
Pongo abelii ENSPPYG00000020520 ortholog_one2one 1 retrogene
retro_pabe_215,
Pan troglodytes ENSPTRG00000022071 ortholog_one2one 1 retrogene
retro_ptro_400,
Rattus norvegicus ENSRNOG00000000161 ortholog_one2one 1 retrogene
retro_rnor_981,
Sarcophilus harrisii ENSSHAG00000017568 ortholog_many2many 1 retrogene
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG00000022111 ortholog_one2one 1 retrogene
retro_itri_870,
Vicugna pacos ENSVPAG00000001963 ortholog_one2one 1 retrogene
retro_vpac_231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_56 71.98 99.54
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Download FASTA sequences of all ENSG00000188419 retrocopies