Parental gene:

HMGN2, ENSG00000198830

Aliases:None
Description:high mobility group nucleosomal binding domain 2 [Source:HGNC Symbol;Acc:4986]
Organism:Human (Homo sapiens)
Coordinates:1:26798940..26802463(+)


>ENSG00000198830
ATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAGGGAGATAAAGCAAAGGTGAAGGACGAACCACAGAGAAGATCCGCGAG
GTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCA
AAGGGAAAAAGGGAAAAGCTGATGCTGGCAAGGAGGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCA
CAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 96 .51 RPM
bodymap2_adrenal 86 .18 RPM
bodymap2_brain 48 .10 RPM
bodymap2_breast 101 .62 RPM
bodymap2_colon 110 .02 RPM
bodymap2_heart 27 .21 RPM
bodymap2_kidney 79 .95 RPM
bodymap2_liver 24 .52 RPM
bodymap2_lung 99 .30 RPM
bodymap2_lymph_node 53 .10 RPM
bodymap2_ovary 163 .04 RPM
bodymap2_prostate 155 .86 RPM
bodymap2_skeletal_muscle 80 .99 RPM
bodymap2_testis 95 .68 RPM
bodymap2_thyroid 157 .77 RPM
bodymap2_white_blood_cells 182 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Felis catus ENSFCAG00000012812 possible_ortholog 3 retrogenes
retro_fcat_1842, retro_fcat_4, retro_fcat_530,
Gorilla gorilla ENSGGOG00000000971 possible_ortholog 11 retrogenes
retro_ggor_114, retro_ggor_146, retro_ggor_162, retro_ggor_166, retro_ggor_182, retro_ggor_186, retro_ggor_197, retro_ggor_23, retro_ggor_38, retro_ggor_40, retro_ggor_54,
Macropus eugenii ENSMEUG00000010966 possible_ortholog 8 retrogenes
retro_meug_1178, retro_meug_126, retro_meug_1859, retro_meug_1910, retro_meug_1997, retro_meug_248, retro_meug_369, retro_meug_76,
Mus musculus ENSMUSG00000003038 possible_ortholog 2 retrogenes
retro_mmus_202, retro_mmus_2582,
Otolemur garnettii ENSOGAG00000032571 possible_ortholog 14 retrogenes
retro_ogar_1438, retro_ogar_1445, retro_ogar_1603, retro_ogar_1668, retro_ogar_1687, retro_ogar_1998, retro_ogar_2097, retro_ogar_2210, retro_ogar_2231, retro_ogar_2424, retro_ogar_287, retro_ogar_2989, retro_ogar_3411, retro_ogar_52,
Pan troglodytes ENSPTRG00000000386 ortholog_one2one 54 retrogenes
retro_ptro_1011, retro_ptro_1024, retro_ptro_1026, retro_ptro_1027, retro_ptro_1040, retro_ptro_1053, retro_ptro_1067, retro_ptro_1094, retro_ptro_1197, retro_ptro_1235, retro_ptro_128, retro_ptro_1291, retro_ptro_1292, retro_ptro_1495, retro_ptro_1516, retro_ptro_1532, retro_ptro_1549, retro_ptro_1625, retro_ptro_1633, retro_ptro_1837, retro_ptro_1844, retro_ptro_1863, retro_ptro_1880, retro_ptro_1929, retro_ptro_1970, retro_ptro_203, retro_ptro_2255, retro_ptro_229, retro_ptro_2292, retro_ptro_2317, retro_ptro_2387, retro_ptro_2445, retro_ptro_2461, retro_ptro_2549, retro_ptro_257, retro_ptro_2650, retro_ptro_2801, retro_ptro_2812, retro_ptro_2840, retro_ptro_2913, retro_ptro_2970, retro_ptro_3187, retro_ptro_3276, retro_ptro_445, retro_ptro_493, retro_ptro_495, retro_ptro_512, retro_ptro_543, retro_ptro_552, retro_ptro_59, retro_ptro_590, retro_ptro_827, retro_ptro_939, retro_ptro_958,
Tursiops truncatus ENSTTRG00000005681 possible_ortholog 5 retrogenes
retro_ttru_1392, retro_ttru_1443, retro_ttru_3, retro_ttru_345, retro_ttru_788,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_100 86.67 100.00
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2. retro_hsap_114 93.33 100.00
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3. retro_hsap_233 91.11 100.00
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4. retro_hsap_273 74.71 95.56
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5. retro_hsap_318 89.89 97.78
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6. retro_hsap_601 92.98 63.33
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7. retro_hsap_688 73.61 75.56
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8. retro_hsap_689 84.44 98.89
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9. retro_hsap_718 81.82 96.67
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10. retro_hsap_793 88.64 96.67
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11. retro_hsap_849 84.27 98.89
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12. retro_hsap_1208 67.42 98.89
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13. retro_hsap_1368 91.01 98.89
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14. retro_hsap_1395 96.67 100.00
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15. retro_hsap_1427 95.38 72.22
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16. retro_hsap_1471 100.00 100.00
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17. retro_hsap_1492 84.44 100.00
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18. retro_hsap_1512 86.81 100.00
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19. retro_hsap_1517 75.82 100.00
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20. retro_hsap_1518 85.56 100.00
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21. retro_hsap_1586 84.62 100.00
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22. retro_hsap_1670 98.89 100.00
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23. retro_hsap_1684 82.80 100.00
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24. retro_hsap_1787 61.36 96.67
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25. retro_hsap_1834 93.33 100.00
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26. retro_hsap_1931 71.43 97.78
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27. retro_hsap_1934 66.30 100.00
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28. retro_hsap_2082 88.89 100.00
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29. retro_hsap_2116 85.56 100.00
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30. retro_hsap_2296 91.21 100.00
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31. retro_hsap_2309 85.71 100.00
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32. retro_hsap_2564 78.67 83.33
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33. retro_hsap_2592 90.11 100.00
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34. retro_hsap_2728 64.29 77.78
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35. retro_hsap_2755 97.78 100.00
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36. retro_hsap_2779 93.33 100.00
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37. retro_hsap_2849 71.11 100.00
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38. retro_hsap_2914 67.06 91.11
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39. retro_hsap_3189 91.95 95.56
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40. retro_hsap_3339 96.70 100.00
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41. retro_hsap_3372 94.44 100.00
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42. retro_hsap_3412 83.70 100.00
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43. retro_hsap_3515 78.02 100.00
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44. retro_hsap_3616 89.33 83.33
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45. retro_hsap_3755 84.44 100.00
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46. retro_hsap_3896 85.87 100.00
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47. retro_hsap_4124 85.71 100.00
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48. retro_hsap_4138 68.89 100.00
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49. retro_hsap_4297 87.91 100.00
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50. retro_hsap_4791 84.62 100.00
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51. retro_hsap_4914 77.53 98.89
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Download FASTA sequences of all ENSG00000198830 retrocopies