RetrogeneDB ID: | retro_ptro_2801 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:5388758..5389027(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN2 | ||
Ensembl ID: | ENSPTRG00000000386 | ||
Aliases: | None | ||
Description: | high mobility group nucleosomal binding domain 2 [Source:HGNC Symbol;Acc:4986] |
Percent Identity: | 84.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKRKAEGDAKGDKAKVKDEPQRRS-ARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKEGNNP |
MPKRKAEGD.KGDK...KD.PQRRS..RLS.KPAPPKPE.KPK.A.AK.GEK.P.GKKGKADAGKEGNNP | |
Retrocopy | MPKRKAEGDVKGDKVTMKDKPQRRS<MRLSTKPAPPKPELKPKNAHAKTGEKIPIGKKGKADAGKEGNNP |
Parental | AENGDAKTDQAQKAEGAGDAK |
AENGDAKTDQAQKAEGAGDAK | |
Retrocopy | AENGDAKTDQAQKAEGAGDAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 61 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 44 .95 RPM |
SRP007412_heart | 0 .00 RPM | 43 .75 RPM |
SRP007412_kidney | 0 .03 RPM | 98 .88 RPM |
SRP007412_liver | 0 .00 RPM | 50 .51 RPM |
SRP007412_testis | 0 .00 RPM | 70 .40 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4124 |
Pongo abelii | retro_pabe_3480 |