Parental gene:

SLC5A2, ENSLACG00000007334

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127210.1:269800..290627(+)


>ENSLACG00000007334
CTATGCCAAATGGAGACGGCCACCGCATCGCCCAGCCCCACGGCGCAGACTGCGCCCATCAATAACCCCATTGATATCTG
CGTCATTGTTGCTTACTTCCTCCTGGTCATCGCAGTCGGACTCTGGTCCATGTGCCGGATGAACCGTAGTACCATCGGTG
GATACTTCCTTGCAGGACGCAGCATGGTCTGGGGGCCTATAGGCGCCTCCCTCTTTGCCAGTAACATCGGCAGTGGTCAC
TTCGTAGGGCTGGCTGGCACGGGAGCAGCCAGGGGGATAGCGGTCGGAGGCTTTGAGTGGATCGCTCTGCTTATGGTTCT
GCTCCTGGGTTGGCTCTTTGTTCCAGTCTATCTGACTGCTGGGGTGATCACGATGCCTCAGTACCTGAAGAAGCGTTTCG
GGGGCAGCCGGATTGGACTCTACCTCACTGTCCTTTCGTTGCTCATCTACATTTTCACAAAGATATCGGTGGACATGTTC
TCGGGAGCTATCTTCATCCAACAAGCACTAGGGTGGAACATCTACATGGCAGTTATCGCCCTGCTGATGATTACAGCGCT
CTACACCGTGACAGGAGGCCTGGCCGCTCTGATGTACACGGACACCTTCCAGACCTTCATCATCATTGCCGGTTCCTTTG
TCCTCATGGGCTTTGCATTTTATAATGTAGGAGGTTATGGGGCTCTCTTCGAAAAGTACCAGAATGCCGTTCCTGTCCTG
CACAAGTCCCAGGATGTGGCGAGGTATAACATCTCCATGGCCTGCTTTGTTCCCCGTCCTGATTCCTACCACCTGCTACG
GGATCCCCTGTCTGGTGACCTACCCTGGCCGGCACTCATCTTTGGGCTCACAATCATCTCCTGCTGGTACTGGTGCACTG
ACCAGGTTATTGTCCAGCGCTGCCTTGCGGCAAAGAATCTGACTCACGTGAAGGCTGGCTGCATTATGTGTGGCTACCTG
AAGCTCCTCCCCATGTTCCTCATGGTGATGCCAGGCATGATAAGCCGAATCCTCTACACCGACGATGTGGCGTGTGTTGT
CCCAGAAGAATGCCAGCGGATCTGTGGGACGGAGGTCGGCTGCTCGAATATAGCTTATCCCAAACTGGTGGTCACACTCA
TGCCAACTGGTTTGAGAGGGCTGATGTTGGCCGTCATGCTGGCCGCCCTGATGAGCTCTCTGGCCTCCATCTTTAACAGC
AGCAGCACTCTCTTCACCATGGACATATGGACCAGACTCCGACCCCATGCTGGAGACAAGGAACTCATGATTGTTGGAAG
GGTTTGGATTCTGTGCATTATTGCTGTCAGCATTGCCTGGATTCCGGTTGTACAGGTGGCACAGAGCGGGCAGCTTTTTG
ACTACATTCAGTCCATTACCAGCTACTTGGCTCCGCCCATCACTGCCGTCTTCCTCCTGGCTGTGTTCGTGAAGAGGGTC
AATGAGCCGGGTGCATTCTGGGGTCTGCTTGGGGGCCTGATGGTTGGACTCGCTCGAATGATTTCGGAGTTTGTTTATGG
CAGTGGGAGCTGCATCTTCCCCAGCAACTGCCCGTGGATCATCTGCGGAATTCATTACCTCTATTTTGCTATCATCCTCT
TCCTCATCACATGCCTCCTGATCCTAGGTGCCTCACTGTGCACCCCTGCCATCCCTGACAAGCACTTACATCGCCTGGTT
TTCAGTCTGAGACACAGCAAAGAGGAGAGGATTGATCTGGACTCCATGCAGGAGACTGAGAGGAAACCAGCACAGGGAGA
GCTGGAGATATCAGATAAGAACAAACAGAAGGGACACTCAGAGACTCCAGGAGACACAGAACAGACTTCTACACAACCTC
GGTGCACAGCAACTCCATACAAAGCAGAGTCTAGGAAGAATGCATTGCGCTGGTGTTTTGAGTGGTTCTGCGGAATGACG
TCGCCACAGGGGGCGGAGCCAAGTGAGGAGGAGAAGGTGGAGACTGCCCGGCAGCTGACTGACATTAATGAAGACCCGCT
GTGGAGAAACGTTGTCAATGTCAACGTCATCGTTATGATGTGCGTTGCAGTCTTCCTTTGGGCATACTATGCATGA

Library Parental gene expression (RPM)
DRP000627_gill 0 .99 RPM
DRP000627_kidney 0 .59 RPM
DRP000627_pectoral_fin 0 .16 RPM
DRP000627_pelvic_fin 0 .08 RPM
DRP000627_pharynx 1 .43 RPM
DRP000627_tail_muscle 0 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000011926 ortholog_one2one 1 retrogene
retro_acar_109,
Ailuropoda melanoleuca ENSAMEG00000016218 ortholog_one2one 1 retrogene
retro_amel_32,
Bos taurus ENSBTAG00000010096 ortholog_one2one 1 retrogene
retro_btau_287,
Canis familiaris ENSCAFG00000016909 ortholog_one2one 1 retrogene
retro_cfam_157,
Felis catus ENSFCAG00000001380 ortholog_one2one 1 retrogene
retro_fcat_110,
Loxodonta africana ENSLAFG00000005737 ortholog_one2one 1 retrogene
retro_lafr_54,
Myotis lucifugus ENSMLUG00000011500 ortholog_one2one 1 retrogene
retro_mluc_218,
Mus musculus ENSMUSG00000030781 ortholog_one2one 1 retrogene
retro_mmus_200,
Pteropus vampyrus ENSPVAG00000012531 ortholog_one2one 1 retrogene
retro_pvam_13,
Tursiops truncatus ENSTTRG00000012500 ortholog_one2one 1 retrogene
retro_ttru_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_35 50.45 80.17
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Download FASTA sequences of all ENSLACG00000007334 retrocopies