Parental gene:

KNOP1, ENSMMUG00000002707

Aliases:None
Description:lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:20:18685573..18698438(-)


>ENSMMUG00000002707
ATGATCACCAAGACACACAAAGTAGACCCTGGGGTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAGAACCAGGGAC
TCGATACTCAGTTGTAAACAATGATGATTACTTGGCCGATGTTTCTTCTGTAAGAGCCACATCCCCCTCTAAGAGTGTGG
TCCATGGGCAGGCACCTGAGATGCCTCCAGTGAGGAAAAAGAAGAAGAAAAAGACGGGTCTCAGCACCCCTTGCGAGGGG
CATGTGGAACCTGAGACACTGCTGCATGCCAGACGGGCAGAGAAGTCACCCAGCCCCAGGAAGCAGGTGCTTGGCCACTT
GGAGTTCCTCAGTGGGGAGAAGAAAAAGAAGTCACCTCTGGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAGACC
CTAGACAGAGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAGAAAAAGGGAGCCCGGGATGCC
ACAGCCTTCTCAGTCCAGGACCCTTGGTTCTGCGAGGCCAGGGAGGCCAGGGATGTTGCGGACACCTGCTCAGTGGGAAA
GAAGGATGAGGGACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAACGGGAAGGTGAAGAAGA
AAAAAAAAATCCACCAGGAGGAAGACACCCTCCCAGGCCACTCCAAGCCCTCCCGGTCCATGGAGAGCAGCCCTAGGAAA
GGAAGTAAAAAGAAGCCAGTCAAAGCTGAGGCTCCGGAATACATCCCCAGAAGTGATGATCCTAAGGCCTCTGCAAAGAA
AAAGATGAAGTCCAAGAAGAAGGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTCAAAAGGAAGAAGAAGAAGAGGAAAG
AGAGTGGGGTAGCAGGAGACCCTTGGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAGAAAGGCAACATG
GATGAGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATTGATCGCGAGTCAGGCAAAACGGAAGCTTC
TGAAACCAGGAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAAGACCAGAAACTGAAAT
TTCTCAGACTTATGGGTGGCTTCAAAAACCTGTCCCCTCCTCCGTCCAACCGCGCCCCCAGCACGACTGCAAGACCCAAC
ATGGCCCTCAGCAAGAAGGCGGCTGACAGCCTGCAGCAGAACCTGCAGCGGGACTACGACCGGGCCATGAGCTGGAAGTA
CAGCCACAGCCGCGGAGCCGGCCTTGGTTTCTCCACTGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGT
CAGTCAAGCTGGAAGATTAA

Library Parental gene expression (RPM)
SRP007412_brain 7 .96 RPM
SRP007412_brain_prefrontal_cortex 7 .14 RPM
SRP007412_cerebellum 9 .43 RPM
SRP007412_heart 7 .95 RPM
SRP007412_kidney 11 .62 RPM
SRP007412_liver 4 .67 RPM
SRP007412_testis 68 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018032 ortholog_one2many 2 retrogenes
retro_cfam_1557, retro_cfam_1763,
Callithrix jacchus ENSCJAG00000009625 ortholog_many2many 1 retrogene
retro_cjac_3199,
Homo sapiens ENSG00000103550 ortholog_one2one 3 retrogenes
retro_hsap_3487, retro_hsap_4007, retro_hsap_979,
Gorilla gorilla ENSGGOG00000005673 ortholog_one2many 1 retrogene
retro_ggor_2691,
Nomascus leucogenys ENSNLEG00000012496 ortholog_one2one 2 retrogenes
retro_nleu_1618, retro_nleu_551,
Otolemur garnettii ENSOGAG00000010065 ortholog_many2many 4 retrogenes
retro_ogar_1115, retro_ogar_1480, retro_ogar_1481, retro_ogar_2259,
Pongo abelii ENSPPYG00000007151 ortholog_one2one 3 retrogenes
retro_pabe_3293, retro_pabe_828, retro_pabe_920,
Pan troglodytes ENSPTRG00000007836 ortholog_one2one 3 retrogenes
retro_ptro_2360, retro_ptro_767, retro_ptro_924,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_798 76.11 52.72
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2. retro_mmul_1771 71.75 56.64
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Download FASTA sequences of all ENSMMUG00000002707 retrocopies