Parental gene:

KNOP1, ENSPTRG00000007836

Aliases:None
Description:lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:19577808..19587575(-)


>ENSPTRG00000007836
ATGATCACCAAGACACACAAAGTAGACCCTGGGCTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAGAACCAGAGAC
TCGATACTCAGTTTTAAACAATGATGATTACTTCGCTGATGTTTCTCCTTTAAGAGCCACATCCCCCTCTAAGAGTGTGG
CCCATGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAG
CATGTAGAACCTGAGACCACGCTGCCTGCCAGACGGACAGAGAAGTCACCCAGCCTCAGGAAGCAGGTGCTTGGCCACTT
GGAGTTCCTCAGTGGGGAAAAGAAAAATAAGAAGTCACCTCTAGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAG
ACCCTAGACAGGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGAC
CCCACAGCCTTCTCAGTCCAGGACCCTTGGTTCTGTGAGACCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGG
GAAGAAGGATGAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGATGAAGA
AAAAAAAAAAAATCCACCAGGAGGGAGACGCCCTCCCAGGCCACTCCAAGCCCTCCAGGTCCATGGAGAGCAGCCCTAGG
AAGGGAAGTAAAAAGAAGCCAGTCAAAGTTGAGGCTCCGAAATACATCTCTATATGTGATGACCCTAAGCTCTCCGCAAA
GAAAAAGATGAAGTCCAAAAAGAATGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAGGAAGAAAAGAAAAGGAAG
AGAGTGGGGTAGCAGACTCTTGGAAGGAAACAGACACAGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATGAG
GCGCACATAGACCAGGTGAGGCGAAAGGCCCAAGAAGAGATCGATCGCGAATCAGGCAAAACGGAAGCTTCTGAAACCAG
GAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAGAAACTGAAATTTCTCAGAC
TTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCAGCACGATTGCAAGGCCCAACATGGCCCTCAGC
AAGAGGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGATGGAAGTACAGCCGGGGAGC
TGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGATT
AA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .83 RPM
SRP007412_cerebellum 4 .34 RPM
SRP007412_heart 2 .07 RPM
SRP007412_kidney 4 .03 RPM
SRP007412_liver 3 .83 RPM
SRP007412_testis 4 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018032 ortholog_one2one 2 retrogenes
retro_cfam_1557, retro_cfam_1763,
Callithrix jacchus ENSCJAG00000009625 ortholog_one2many 1 retrogene
retro_cjac_3199,
Homo sapiens ENSG00000103550 ortholog_one2one 3 retrogenes
retro_hsap_3487, retro_hsap_4007, retro_hsap_979,
Gorilla gorilla ENSGGOG00000005673 ortholog_one2many 1 retrogene
retro_ggor_2691,
Macaca mulatta ENSMMUG00000002707 ortholog_one2one 2 retrogenes
retro_mmul_1771, retro_mmul_798,
Nomascus leucogenys ENSNLEG00000012496 ortholog_one2one 2 retrogenes
retro_nleu_1618, retro_nleu_551,
Otolemur garnettii ENSOGAG00000010065 ortholog_one2many 4 retrogenes
retro_ogar_1115, retro_ogar_1480, retro_ogar_1481, retro_ogar_2259,
Pongo abelii ENSPPYG00000007151 ortholog_one2one 3 retrogenes
retro_pabe_3293, retro_pabe_828, retro_pabe_920,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_767 80.74 82.78
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2. retro_ptro_924 85.59 74.83
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3. retro_ptro_2360 80.86 85.43
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Download FASTA sequences of all ENSPTRG00000007836 retrocopies