Parental gene:

KNOP1, ENSPPYG00000007151

Aliases:None
Description:lysine-rich nucleolar protein 1 [Source:HGNC Symbol;Acc:34404]
Organism:Orangutan (Pongo abelii)
Coordinates:16:19114554..19126293(-)


>ENSPPYG00000007151
ATGGCCGCGGTTTCCACGGTAACCGCGTTCGCCGGAAGGCCGCGACCCGGAAGAAGCCGGAACCCGAGAGGGTGGGCCGG
CGACTCGAAGTGGACTTCCGGGTCACGGCGGAGCGGGCTCTCACGTGGAGGCGGGGAAATTTCGCCCACCGGAATGATCA
CCAAGACACACAAAGTAGACCCTGGGCTCCCAGAGAAGAAAAAGAAAAAGAAAGTGGTCAAAGAACCAGAGACTCGATAC
TCAGTTTTAAACGATGATTACTTTGCCGATATTTCTCCTGTAAGAGCCACATCCCCCTCTAAGAGCGTGGCCCATGGGCA
GGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAAAAGAAGGGTGTCAGCACCCTTTGCGAGGAGCATGTAGAAC
CTGAGACCACGCTGCCTGCCAGACGGACAGAGAAGTCACCCAGCTCCAGGAAGCAGGTGCTTGGCCACTTGGAGTTCCTT
AGTGGGGAGAAGAAAAAGAAGAAGTCACCTCTGGCCATGTCCCATGCCTCTGGGGTGAAAACCTCTGCAGACCCTAGACA
GGGTGAGGAGGAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGAGCCCAGGACCCCACAGCCT
TCTCAGTCCAGGACCCTTGGTTCTGCGAGGCCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGGGAAGAAGGAT
GAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGGAAGGTGAAGAAGAAAAAAAA
AATCCACCAGGAGGGAGACGCCCTCCCAGGCCACTCCAAGACCTCTAGGTCCATGGAGAGCAGCCCTAGGAAAGGAAGTA
AAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCCCATAAGTGATGACCCTAAGGCCTCCACAAAGAAAAAGATG
AAGTCCAAAAAGAAGGTAGAGCAGCCAGTCATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAG
TGGGGTAGCAGGAGACCCTTGGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATG
AGGCGCACATAGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGCGAGTCAGGCAAAACGGAAGCTTCTGAA
ACCAGGAAGTGGACGGGAACCCATTTTCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAGAAACTGAAATTTCTCAG
ACTTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCGGCACGATTGCAAGGCCCAACATGGCCCTCG
GCAAGAAGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTACGACCGGGCCATGAGCTGGAAGTACAGCCGGGGA
GCCGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCTTTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGA
TTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .92 RPM
SRP007412_cerebellum 8 .76 RPM
SRP007412_heart 3 .16 RPM
SRP007412_kidney 6 .86 RPM
SRP007412_liver 6 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018032 ortholog_one2one 2 retrogenes
retro_cfam_1557, retro_cfam_1763,
Callithrix jacchus ENSCJAG00000009625 ortholog_one2many 1 retrogene
retro_cjac_3199,
Homo sapiens ENSG00000103550 ortholog_one2one 3 retrogenes
retro_hsap_3487, retro_hsap_4007, retro_hsap_979,
Gorilla gorilla ENSGGOG00000005673 ortholog_one2many 1 retrogene
retro_ggor_2691,
Macaca mulatta ENSMMUG00000002707 ortholog_one2one 2 retrogenes
retro_mmul_1771, retro_mmul_798,
Nomascus leucogenys ENSNLEG00000012496 ortholog_one2one 2 retrogenes
retro_nleu_1618, retro_nleu_551,
Otolemur garnettii ENSOGAG00000010065 ortholog_one2many 4 retrogenes
retro_ogar_1115, retro_ogar_1480, retro_ogar_1481, retro_ogar_2259,
Pan troglodytes ENSPTRG00000007836 ortholog_one2one 3 retrogenes
retro_ptro_2360, retro_ptro_767, retro_ptro_924,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_828 81.98 74.95
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2. retro_pabe_920 61.62 73.77
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3. retro_pabe_3293 79.10 77.91
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Download FASTA sequences of all ENSPPYG00000007151 retrocopies