Parental gene:

MMU.3907, ENSMMUG00000005633

Aliases:None
Description:methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:RefSeq peptide;Acc:NP_001252571]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:12:13234791..13252637(-)


>ENSMMUG00000005633
ATGGCCAATGTGCTTTGTAACAGAGCCAGACTGGTTTCCTATCTCCCAGGATTTTGCTCTTTAGTTAAAAGGGTTGTCAA
TCCCAGAGCCTTTTCGACTGCAGGATCGTCAGGTTCGGATGAGTCTCATGTGGCCGCTGCACCTCCAGATATATGCTCTC
GAACAGTGTGGCCTGATGAAACTATGGGACCCTTCGGACCTCAAGATCAGAGGTTCCAGCTTCCTGGGAACATAGGTTTT
GATTGTCACCTCAATGGGACTTCTTCACAGAAGAAAAGCCTGGTTCATAAAACTTTGCCTGATGTTCTAGCAGAACCTTT
ATCAAGTGAAAGACATGAGTTTGTGATGGCACAGTATGTGAATGAATTTCAGGGTAATGATGCACCTGTTGAACAAGAAA
TTAACAGTGCAGAAACTTACTTTGAAAGTGCCAGAGTAGAGTGTGCAATACAAACATGTCCAGAATTGCTGCGAAAAGAT
TTTGAATCACTGTTTCCAGAAGTAGCTAATAGCAAACTACTGATTCTGACTGTAACACAGAAAACTAAGAATGATATGAC
TGTTTGGAGTGAAGAAGTAGAAATTGAAAGAGAAGTGCTCTTAGAAAAGTTCATCAACGGTGCTAAGGAAATTTGCTACG
CTCTTCGAGCTGAGGGATATTGGGCTGACTTTATTGACCCATCATCTGGTTTGGCATTTTTTGGACCATATACAAACAAC
ACTCTTTTTGAAACTGACGAACGCTACCGACATTTAGGATTCTCTGTTGATGACCTTGGATGCTGTAAAGTGATTCGTCA
TAGTCTCTGGGGTACCCATGTAGTTGTAGGAAGTATCTTCACTAATGCAACACCAGACAGCCATATTATGAAGAAATTAA
GTGGAAATTAG

Library Parental gene expression (RPM)
SRP007412_brain 28 .68 RPM
SRP007412_brain_prefrontal_cortex 18 .72 RPM
SRP007412_cerebellum 25 .44 RPM
SRP007412_heart 30 .86 RPM
SRP007412_kidney 33 .68 RPM
SRP007412_liver 37 .88 RPM
SRP007412_testis 69 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000003086 ortholog_one2one 2 retrogenes
retro_cjac_4082, retro_cjac_4101,
Cavia porcellus ENSCPOG00000007690 ortholog_one2many 1 retrogene
retro_cpor_30,
Homo sapiens ENSG00000168288 ortholog_one2one 2 retrogenes
retro_hsap_4716, retro_hsap_865,
Gorilla gorilla ENSGGOG00000027348 ortholog_one2one 1 retrogene
retro_ggor_704,
Monodelphis domestica ENSMODG00000003566 ortholog_one2one 2 retrogenes
retro_mdom_1749, retro_mdom_620,
Mustela putorius furo ENSMPUG00000000323 ortholog_one2one 1 retrogene
retro_mputfur_1253,
Nomascus leucogenys ENSNLEG00000010795 ortholog_one2one 2 retrogenes
retro_nleu_1988, retro_nleu_426,
Otolemur garnettii ENSOGAG00000034385 ortholog_one2one 4 retrogenes
retro_ogar_3266, retro_ogar_356, retro_ogar_688, retro_ogar_813,
Pan troglodytes ENSPTRG00000012525 ortholog_one2one 1 retrogene
retro_ptro_599,
Ictidomys tridecemlineatus ENSSTOG00000021576 ortholog_one2one 1 retrogene
retro_itri_1809,
Tarsius syrichta ENSTSYG00000009075 ortholog_one2one 1 retrogene
retro_tsyr_1690,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1058 82.10 54.58
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Download FASTA sequences of all ENSMMUG00000005633 retrocopies