Parental gene:

MMU.9721, ENSMMUG00000013429

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:19:48173944..48184424(+)


>ENSMMUG00000013429
ATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTCCGGGAA
GCTGAAAGTCCCCGAATGGGTCGACACCGTCAAGCTAGCCAAGCACAAAGAGCTTGCTCCCTACGATGAGAACTGGTTTT
ACACACGAGCTGCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGG
GGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCTCGTCGGGTCCTCCAAGCCCT
GGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGGGGCCGCAAACTGACACCTCAGGGACAGAGAGATCTGGACAGAA
TCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAG

Library Parental gene expression (RPM)
SRP007412_brain 7 .28 RPM
SRP007412_brain_prefrontal_cortex 25 .46 RPM
SRP007412_cerebellum 3 .68 RPM
SRP007412_heart 25 .50 RPM
SRP007412_kidney 7 .86 RPM
SRP007412_liver 26 .72 RPM
SRP007412_testis 27 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000028485 possible_ortholog 10 retrogenes
retro_cfam_1017, retro_cfam_1074, retro_cfam_1155, retro_cfam_1251, retro_cfam_1377, retro_cfam_149, retro_cfam_1998, retro_cfam_2212, retro_cfam_249, retro_cfam_499,
Callithrix jacchus ENSCJAG00000020243 ortholog_one2many 5 retrogenes
retro_cjac_1968, retro_cjac_2004, retro_cjac_2094, retro_cjac_2324, retro_cjac_3,
Dasypus novemcinctus ENSDNOG00000002376 ortholog_one2one 4 retrogenes
retro_dnov_1084, retro_dnov_1124, retro_dnov_1838, retro_dnov_2456,
Equus caballus ENSECAG00000009738 ortholog_one2one 2 retrogenes
retro_ecab_263, retro_ecab_815,
Homo sapiens ENSG00000105372 ortholog_one2one 5 retrogenes
retro_hsap_1400, retro_hsap_2417, retro_hsap_3174, retro_hsap_3642, retro_hsap_667,
Microcebus murinus ENSMICG00000004554 ortholog_one2one 1 retrogene
retro_mmur_1480,
Monodelphis domestica ENSMODG00000010067 ortholog_one2one 3 retrogenes
retro_mdom_1531, retro_mdom_1888, retro_mdom_883,
Mustela putorius furo ENSMPUG00000007164 ortholog_one2one 4 retrogenes
retro_mputfur_1071, retro_mputfur_1148, retro_mputfur_1470, retro_mputfur_1503,
Mus musculus ENSMUSG00000040952 ortholog_one2one 15 retrogenes
retro_mmus_1206, retro_mmus_1207, retro_mmus_1528, retro_mmus_1711, retro_mmus_1713, retro_mmus_2095, retro_mmus_2295, retro_mmus_2535, retro_mmus_2850, retro_mmus_3337, retro_mmus_3499, retro_mmus_639, retro_mmus_643, retro_mmus_684, retro_mmus_899,
Otolemur garnettii ENSOGAG00000026255 ortholog_one2one 3 retrogenes
retro_ogar_1315, retro_ogar_1663, retro_ogar_2305,
Rattus norvegicus ENSRNOG00000048199 ortholog_one2many 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sus scrofa ENSSSCG00000003042 possible_ortholog 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,
Ictidomys tridecemlineatus ENSSTOG00000003502 ortholog_one2one 3 retrogenes
retro_itri_256, retro_itri_751, retro_itri_872,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_404 85.05 73.79
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2. retro_mmul_607 90.70 59.31
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3. retro_mmul_691 94.48 100.00
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4. retro_mmul_1201 63.72 76.55
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5. retro_mmul_1358 100.00 66.90
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6. retro_mmul_1807 80.82 100.00
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7. retro_mmul_2007 78.91 100.00
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8. retro_mmul_2443 84.55 84.83
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Download FASTA sequences of all ENSMMUG00000013429 retrocopies