RetrogeneDB ID: | retro_mmur_1480 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_6709:78211..78569(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS19 | ||
Ensembl ID: | ENSMICG00000004554 | ||
Aliases: | None | ||
Description: | ribosomal protein S19 [Source:HGNC Symbol;Acc:10402] |
Percent Identity: | 75.83 % |
Parental protein coverage: | 81.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAG |
P.VTVKDVNQQEFVRALAAFLK.SGKLKVP..VDTVKLAKHKE.APY.ENWFYT.AAST...LYL.GGAG | |
Retrocopy | PRVTVKDVNQQEFVRALAAFLKTSGKLKVPRRVDTVKLAKHKEFAPYNENWFYT*AASTTQNLYLWGGAG |
Parental | VGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQAL-EGLK-MVEKDQDG |
VGSMTKI....Q.NGV.PSH.S..SKSVA..VLQAL..G.K...EKDQ.G | |
Retrocopy | VGSMTKISREHQINGVTPSHSSQASKSVAHCVLQALRRGAK>IMEKDQNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000028485 | 10 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002376 | 4 retrocopies | |
Equus caballus | ENSECAG00000009738 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004554 | 1 retrocopy |
retro_mmur_1480 ,
|
Macaca mulatta | ENSMMUG00000013429 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000010067 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000007164 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000026255 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000048199 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000003042 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003502 | 3 retrocopies |