Parental gene: | CTSB, ENSMODG00000012029 |
| Aliases: | None |
| Description: | cathepsin B [Source:HGNC Symbol;Acc:2527] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 1:559733257..559740173(+) |
>ENSMODG00000012029
ATGTGGCGGTTCTTGGCCACCCTGTGTTGCCTGGTCGTACTGACCAGTGCCAAGAGCAGATTATCCATTCCTCCTCTATC
AGATGAAATGGTCAACCACATCAATAAGCTCAACACTACATGGCAGGCTGGGCACAACTTCCTTAATGCAGACATGAGCT
ACGTAAAGAAACTCTGTGGTACCTTCATGGGTGGAGCCAAGCTACTACCTCAGAGAATGATACTGGCTGATAATATGAAG
CTACCAGAAAACTTTGATGCCCGGGAACAATGGCCAAACTGCCCTACTATCAAGGAAATAAGAGACCAGGGTTCCTGTGG
ATCTTGCTGGGCATTTGGAGCTGTGGAAGCTATTTCTGACAGGATCTGTGTACACAGTAATGGAAATGCTAATGTAGAAG
TGTCTGCTGAGGATCTGCTTAGCTGCTGTGGATCTGAATGTGGGGATGGCTGTAATGGTGGTTTTCCTGCTGGAGCTTGG
AATTTCTGGACTAAAAAAGGCCTTGTATCTGGTGGTCTCTATGATTCCCATGTGGGCTGCCGACCTTATTCCATCCCTCC
ATGTGAGCACCATGTGAATGGCTCCCGTCCTGCCTGTACTGGAGAAGAGGGCGACACCCCCACGTGCAGGAAGAAGTGTG
AAGAGGGCTATTCTACTCAGTACAAGGATGACAAGAACTACGGATCAACCTCCTATAGTGTACCTTCAAGTGAGCAGGAG
ATCATGGCTGAGATCTACAAGAATGGCCCTGTGGAGGGAGCTTTTAGTGTATATGAAGACTTCCTACACTACAAGTCTGG
AGTATACCAGCACGTTGCTGGAGAGATGCTTGGAGGTCACGCCATTCGAATCCTTGGCTGGGGTGTGGAAAATGGAATCC
GTTACTGGCTGGCTGCCAACTCCTGGAATATTGACTGGGGTGATAATGGCTTCTTTAAATTCCTCCGTGGAAAGAATCAC
TGTGGAATAGAATCTGAAATTATAGCTGGAATTCCCAGAACGGATCAATATTGA
ATGTGGCGGTTCTTGGCCACCCTGTGTTGCCTGGTCGTACTGACCAGTGCCAAGAGCAGATTATCCATTCCTCCTCTATC
AGATGAAATGGTCAACCACATCAATAAGCTCAACACTACATGGCAGGCTGGGCACAACTTCCTTAATGCAGACATGAGCT
ACGTAAAGAAACTCTGTGGTACCTTCATGGGTGGAGCCAAGCTACTACCTCAGAGAATGATACTGGCTGATAATATGAAG
CTACCAGAAAACTTTGATGCCCGGGAACAATGGCCAAACTGCCCTACTATCAAGGAAATAAGAGACCAGGGTTCCTGTGG
ATCTTGCTGGGCATTTGGAGCTGTGGAAGCTATTTCTGACAGGATCTGTGTACACAGTAATGGAAATGCTAATGTAGAAG
TGTCTGCTGAGGATCTGCTTAGCTGCTGTGGATCTGAATGTGGGGATGGCTGTAATGGTGGTTTTCCTGCTGGAGCTTGG
AATTTCTGGACTAAAAAAGGCCTTGTATCTGGTGGTCTCTATGATTCCCATGTGGGCTGCCGACCTTATTCCATCCCTCC
ATGTGAGCACCATGTGAATGGCTCCCGTCCTGCCTGTACTGGAGAAGAGGGCGACACCCCCACGTGCAGGAAGAAGTGTG
AAGAGGGCTATTCTACTCAGTACAAGGATGACAAGAACTACGGATCAACCTCCTATAGTGTACCTTCAAGTGAGCAGGAG
ATCATGGCTGAGATCTACAAGAATGGCCCTGTGGAGGGAGCTTTTAGTGTATATGAAGACTTCCTACACTACAAGTCTGG
AGTATACCAGCACGTTGCTGGAGAGATGCTTGGAGGTCACGCCATTCGAATCCTTGGCTGGGGTGTGGAAAATGGAATCC
GTTACTGGCTGGCTGCCAACTCCTGGAATATTGACTGGGGTGATAATGGCTTCTTTAAATTCCTCCGTGGAAAGAATCAC
TGTGGAATAGAATCTGAAATTATAGCTGGAATTCCCAGAACGGATCAATATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 914 .00 RPM |
| SRP007412_cerebellum | 672 .82 RPM |
| SRP007412_heart | 697 .33 RPM |
| SRP007412_kidney | 1077 .17 RPM |
| SRP007412_liver | 2749 .05 RPM |
| SRP007412_testis | 434 .90 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000164733 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000007380 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002844 | other_paralog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000016601 | other_paralog | 1 retrogene | |
| Mus musculus | ENSMUSG00000021939 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_1066 | 95.56 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1067 | 94.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mdom_1199 | 95.27 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mdom_1707 | 84.46 | 56.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mdom_1973 | 93.79 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mdom_1985 | 94.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000012029 retrocopies