Parental gene:

Apex1, ENSMUSG00000035960

Aliases:Apex1, APE, Apex, HAP1, Ref-1
Description:apurinic/apyrimidinic endonuclease 1 [Source:MGI Symbol;Acc:MGI:88042]
Organism:Mouse (Mus musculus)
Coordinates:14:50924967..50927139(+)


>ENSMUSG00000035960
ATGCCAAAGCGGGGAAAGAAAGCGGCGGCCGACGACGGGGAAGAACCCAAGTCGGAGCCAGAGACCAAGAAGAGTAAGGG
GGCAGCAAAGAAAACCGAGAAGGAGGCCGCGGGAGAGGGCCCTGTCCTGTACGAGGACCCTCCAGATCAGAAAACCTCAC
CCAGTGGCAAATCTGCCACACTCAAGATATGCTCCTGGAATGTGGATGGGCTTCGAGCCTGGATTAAAAAGAAAGGTTTG
GATTGGGTAAAGGAAGAAGCACCAGATATCTTGTGCCTCCAAGAGACCAAGTGCTCGGAGAACAAACTCCCGGCTGAACT
GCAAGAGCTGCCTGGACTCACCCATCAGTACTGGTCAGCTCCGTCAGACAAAGAAGGATACAGTGGTGTGGGCCTACTTT
CCCGCCAGTGCCCGCTAAAAGTCTCTTATGGCATTGGCGAGGAAGAACATGATCAAGAAGGCCGGGTGATTGTGGCTGAA
TTTGAGTCCTTTGTCCTGGTAACAGCCTATGTTCCCAATGCAGGCAGGGGTCTGGTAAGACTGGAATACCGACAGCGTTG
GGATGAAGCCTTCCGAAAGTTTCTAAAGGACTTGGCTTCCAGAAAGCCTCTTGTGCTATGTGGGGATCTCAATGTGGCTC
ATGAAGAAATTGACCTCCGTAACCCCAAAGGAAACAAAAAGAATGCTGGCTTTACTCCCCAGGAGCGCCAAGGTTTTGGG
GAACTGCTACAAGCTGTACCATTGGCTGACAGCTTCCGGCATCTCTACCCCAACACTGCTTACGCTTACACTTTCTGGAC
TTACATGATGAATGCCCGCTCTAAGAATGTTGGTTGGCGCCTTGATTACTTTTTGCTTTCCCACTCTCTTTTACCTGCAT
TGTGTGACAGCAAGATCCGGTCCAAGGCTCTTGGCAGTGACCACTGTCCCATCACCCTTTACCTAGCACTGTGA

Library Parental gene expression (RPM)
SRP007412_brain 3 .11 RPM
SRP007412_cerebellum 2 .04 RPM
SRP007412_heart 2 .71 RPM
SRP007412_kidney 2 .44 RPM
SRP007412_liver 3 .66 RPM
SRP007412_testis 4 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002745 ortholog_one2one 1 retrogene
retro_btau_1729,
Echinops telfairi ENSETEG00000004855 ortholog_one2many 1 retrogene
retro_etel_1392,
Loxodonta africana ENSLAFG00000021872 ortholog_one2one 1 retrogene
retro_lafr_948,
Mus musculus ENSMUSG00000025269 within_species_paralog 1 retrogene
retro_mmus_2564,
Otolemur garnettii ENSOGAG00000013335 ortholog_one2many 3 retrogenes
retro_ogar_1284, retro_ogar_2145, retro_ogar_3243,
Rattus norvegicus ENSRNOG00000009663 ortholog_one2one 1 retrogene
retro_rnor_2971,
Ictidomys tridecemlineatus ENSSTOG00000010096 ortholog_one2one 1 retrogene
retro_itri_1560,
Tupaia belangeri ENSTBEG00000006405 ortholog_one2one 1 retrogene
retro_tbel_3409,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_433 85.80 95.48
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2. retro_mmus_2027 70.56 60.88
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Download FASTA sequences of all ENSMUSG00000035960 retrocopies