Parental gene:

RAB5B, ENSOCUG00000013895

Aliases:None
Description:RAB5B, member RAS oncogene family [Source:HGNC Symbol;Acc:9784]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:39540617..39544536(+)


>ENSOCUG00000013895
CCTCCCTCTACCCTTTCCCACTCTGATAATCTGGCCATGACTAGCAGAAGCACAGCCAGGCCCAATGGGCAGCCTCAAGC
CAGCAAAATATGCCAATTCAAATTGGTCCTGCTGGGGGAATCTGCGGTGGGAAAATCTAGTCTGGTATTACGATTTGTCA
AAGGGCAATTCCACGAATACCAGGAGAGTACCATTGGAGCGGCCTTCCTCACCCAGTCTGTTTGTCTAGATGATACAACA
GTCAAGTTTGAGATCTGGGACACAGCTGGGCAAGAGCGATACCACAGCTTAGCTCCCATGTACTACAGGGGTGCCCAAGC
TGCGATTGTTGTTTATGACATTACTAATCAGGAAACATTTGCCCGAGCAAAGACATGGGTAAAGGAACTACAGAGGCAGG
CCAGTCCTAGCATCGTTATTGCCCTGGCGGGGAACAAAGCTGACCTGGCCAACAAGCGCATGGTGGAGTATGAAGAGGCC
CAGGCATATGCAGATGACAACAGCTTATTGTTTATGGAGACTTCAGCCAAGACGGCTATGAACGTGAACGATCTCTTCCT
GGCAATAGCTAAGAAGTTGCCAAAGAGTGAACCCCAGAATCTGGGGGGTGCAGCAGGCCGAAGCCGGGGCGTGGATCTTC
ATGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 20 .35 RPM
SRP017611_kidney 38 .41 RPM
SRP017611_brain 37 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007527 ortholog_one2one 2 retrogenes
retro_cjac_1215, retro_cjac_1879,
Dasypus novemcinctus ENSDNOG00000016952 ortholog_one2one 1 retrogene
retro_dnov_350,
Equus caballus ENSECAG00000023306 ortholog_one2one 1 retrogene
retro_ecab_280,
Echinops telfairi ENSETEG00000009603 ortholog_one2one 2 retrogenes
retro_etel_617, retro_etel_698,
Mus musculus ENSMUSG00000000711 ortholog_one2one 1 retrogene
retro_mmus_2081,
Nomascus leucogenys ENSNLEG00000017570 ortholog_one2one 1 retrogene
retro_nleu_2531,
Oryctolagus cuniculus ENSOCUG00000004414 within_species_paralog 1 retrogene
retro_ocun_554,
Oryctolagus cuniculus ENSOCUG00000012200 within_species_paralog 1 retrogene
retro_ocun_1034,
Ochotona princeps ENSOPRG00000007883 ortholog_one2one 3 retrogenes
retro_opri_1061, retro_opri_1116, retro_opri_299,
Procavia capensis ENSPCAG00000010486 ortholog_one2many 1 retrogene
retro_pcap_380,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1193 73.27 95.15
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Download FASTA sequences of all ENSOCUG00000013895 retrocopies