Parental gene: | UBAP1, ENSOPRG00000009100 |
| Aliases: | None |
| Description: | ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:12461] |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | GeneScaffold_3634:7992..36017(+) |
>ENSOPRG00000009100
ATGGCTTCTAAGAAGTTGGGTGCAGATAGTCATGGGACTTTCAGTTACCTTGATGATGTCCCATTTAAGATAGGAGACAA
ATTCAAAACACCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCAGGTTGTCAGAGAAGTACAGT
ATGACTTCTCCTTGGAAAAGAAGACCATCGAGTGGGCCGAGGACGTTAGGAAGATCCAGGACGCCCAGCGGGAAGCAGAA
CGCAAGGCTCAGGAGGCGGAAGCCAAAGTCAATTCCAAGAGTGGCCCAGAGGGCGATAACAAAATGAGCTTCTCCAAAAC
TCAAAGTATAGCCACAATGCCACCTCCTATTAACCCCATCCTTGCCAGCCTGCAGCACAACAGCATCCTCACTCCAACCC
GGGTCAGCAGTAGTGCCACGAAGCAAAAAGCCCTCAGCCCCCCACACACAAAGGCAGATTTCAATCCTGCCGACTTTGAG
TGTGAAGAGGACCCATTTGATAATCTGGAGTTAAAAACCATTGATGAGAAAGAAGAGCTGAGAAACATTCTGGTAGGAGC
CACGGGACCCATTATGGCTCAGTTATTGGACAGTAACTTGCCCAGAGGCGGCTCCGGGTCGGTGTTACAGGATGAGGAGG
TCCTGGCATCCTTGGAGCGGGCAACCCTGGATTTCAAGCCTCTTCACAAACCCAATGGCTTTATAACCTTACCACAGTTG
GGCAACTGTGAAAAGATGTCGCTGTCTTCCAAAGTGTCCCTCCCACCGATTCCTGCAGTAAGCAATATCAAATCCCTGTC
CTTCCCCAAACTTGACTCTGATGACAGCAATCAGAAGACAGCCAAACTGGCAAGCACTTTCCATAGCACATCCTGCCTCC
GCAGTGGCACGCTCCTGAACTCCTTCAAGCCTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGCATCATACTCTTGGG
CTTTCAGCTTTGAACTTGGACAGTGGCACTGAGGTGCCCACCCTTGCACCCTCCCAGACGCCTTCCCATTCAGTCTTGTC
TGTGTGCACGGAAGAGTCATCACCTCCACAGGCAGGCTCCGCGGTCGCCCCTCCTAATTTCTCAATGTCACAAGTGCCCA
GCTGCCCCCAGGCCTACTCTGAGCTACAGACATTGTCCCCCAGTGAGCGGCAATGTGTGGAGACAGTGGTCAACATGGGC
TACTCCTACGATTGTGTCCTGAGAGCTATGAAGAAGAAAGGAGAGAATATTGAGCAGATTCTCGACTATCTCTTTGCACA
TGGACAACTTTGTGAGAAGGGCTTTGACCCTCTGTTGGTGGAAGAGGCTTTGGAAATGCACCAGTGTTCAGAAGAAAAGA
TGATGGAGTTTCTTCAGTTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTGAAGGACATTAAGGAAGCGTTGGTATTA
CACAACAATGACCAGGACAATGCTTTGGAAGACCTCATGGCCCGGGCAGGAGCCAGCTGA
ATGGCTTCTAAGAAGTTGGGTGCAGATAGTCATGGGACTTTCAGTTACCTTGATGATGTCCCATTTAAGATAGGAGACAA
ATTCAAAACACCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCAGGTTGTCAGAGAAGTACAGT
ATGACTTCTCCTTGGAAAAGAAGACCATCGAGTGGGCCGAGGACGTTAGGAAGATCCAGGACGCCCAGCGGGAAGCAGAA
CGCAAGGCTCAGGAGGCGGAAGCCAAAGTCAATTCCAAGAGTGGCCCAGAGGGCGATAACAAAATGAGCTTCTCCAAAAC
TCAAAGTATAGCCACAATGCCACCTCCTATTAACCCCATCCTTGCCAGCCTGCAGCACAACAGCATCCTCACTCCAACCC
GGGTCAGCAGTAGTGCCACGAAGCAAAAAGCCCTCAGCCCCCCACACACAAAGGCAGATTTCAATCCTGCCGACTTTGAG
TGTGAAGAGGACCCATTTGATAATCTGGAGTTAAAAACCATTGATGAGAAAGAAGAGCTGAGAAACATTCTGGTAGGAGC
CACGGGACCCATTATGGCTCAGTTATTGGACAGTAACTTGCCCAGAGGCGGCTCCGGGTCGGTGTTACAGGATGAGGAGG
TCCTGGCATCCTTGGAGCGGGCAACCCTGGATTTCAAGCCTCTTCACAAACCCAATGGCTTTATAACCTTACCACAGTTG
GGCAACTGTGAAAAGATGTCGCTGTCTTCCAAAGTGTCCCTCCCACCGATTCCTGCAGTAAGCAATATCAAATCCCTGTC
CTTCCCCAAACTTGACTCTGATGACAGCAATCAGAAGACAGCCAAACTGGCAAGCACTTTCCATAGCACATCCTGCCTCC
GCAGTGGCACGCTCCTGAACTCCTTCAAGCCTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGCATCATACTCTTGGG
CTTTCAGCTTTGAACTTGGACAGTGGCACTGAGGTGCCCACCCTTGCACCCTCCCAGACGCCTTCCCATTCAGTCTTGTC
TGTGTGCACGGAAGAGTCATCACCTCCACAGGCAGGCTCCGCGGTCGCCCCTCCTAATTTCTCAATGTCACAAGTGCCCA
GCTGCCCCCAGGCCTACTCTGAGCTACAGACATTGTCCCCCAGTGAGCGGCAATGTGTGGAGACAGTGGTCAACATGGGC
TACTCCTACGATTGTGTCCTGAGAGCTATGAAGAAGAAAGGAGAGAATATTGAGCAGATTCTCGACTATCTCTTTGCACA
TGGACAACTTTGTGAGAAGGGCTTTGACCCTCTGTTGGTGGAAGAGGCTTTGGAAATGCACCAGTGTTCAGAAGAAAAGA
TGATGGAGTTTCTTCAGTTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTGAAGGACATTAAGGAAGCGTTGGTATTA
CACAACAATGACCAGGACAATGCTTTGGAAGACCTCATGGCCCGGGCAGGAGCCAGCTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Erinaceus europaeus | ENSEEUG00000011672 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013063 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015802 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000028294 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013035 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_355 | 97.01 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_opri_477 | 78.91 | 50.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_opri_680 | 97.01 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000009100 retrocopies