Parental gene:

ACCSL, ENSPPYG00000003340

Aliases:None
Description:1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like [Source:HGNC Symbol;Acc:34391]
Organism:Orangutan (Pongo abelii)
Coordinates:11:24686099..24697985(-)


>ENSPPYG00000003340
ATGAGTCATCGGTCAGACACCCTTCCTGTGCCCTCTGGTCAGAGGAGAGGCCAGGTCCCCAGAGACCACAGCATCTATAT
CCAGCTGTTGGAGATAACGCTGCACTTGCAGCAGGCCATGACGGAGCACTTCGTGCAGCTGACGAGCAGACAGGGCCTGT
CGCTGGAGGAAAGGAGGCACACTGAGGCCATCTGTGAGCATGAAGCCCTTCTGAGTCGCTTAATATGCCGGATGATCAAC
CTCCTACAGTCTGGGGCCACGAGTGGCCTGGAGCTCCAAGTGCCTCTTCCTTCTGAGGACTCTAGGGGTGATGTCAGATA
TGGGCAGAGGGCCCAACTGTCTGGGCAGCCTGATCCAGTTCCCCAGCTGAGTGATTGTGAACCTGCCTTTGTCAGCCGTG
ACCTATCCAACCGTGGGATTGACATCTCTGTCTTCTATCAGTCGAGCTTCCAGGACTACAATGCCTACCAAAAAGATAAA
TATCATAAGGACAAGAACACCTTGGGCTTCATTAACCTTGGCACCAGTGAGAACAAGCTCTGCATGGATCTGATGACTGA
AAGATTGCAACAAAGTGACATGAACTGCATTGAGGACACCTTGCTTCAGTACCCTGATTGGAGAGGGCAGCCATTCCTGC
GGGAAGAAGTGGCCCGGTTCCTGACCTACTACTGCAGGGCACCTACCCAACTTGACCCAGAAAACGTGGTGGTTCTAAAT
GGCTACTGCTCTGTCTTCTCTGCCCTGGCCATGGTTCTGTGTGATCCAGGCGAGGGCTTCCTGGTCCCTGCTCCCTTCTA
TGGTGGCTTTGCCTTTAGCTCCCGCCTGTATGCAAAGGTTGAGTTGATTCCTGTCCACCTGGAGAGTGAGGTCACTGTTA
CAAACACCCATCCTTTCCAGCTCACTGTGGACAAGTTAGAGGAAGCCCTGCTTGAAGCTAGGCTTGAGGGGAAAAAGGTC
CGAGGCCTTGTGCTAATCAACCCTCAGAATCCTCTGGGTGACATCTACTCCCCAGACTCACTGATGAAATACCTGGAATT
TGCCAAGAGGTATAACCTACATGTGATCATAGATGAGATTTACATGCTGTCTGTGTTTGATGAATCCATCACATTCCACA
GTGTTCTGAGCATGAAAAGTTTGCCTGATAGCAACAGGACCCATGTGATCTGGGGTACCAGTAAGGATTTTGGCATCTCT
GGCTTCCGCTTTGGTGCTCTGTACACCCACAACAAGGAGGTGGCCTCTGCTGTGAGTGCCTTTGGTTACCTCCACAGTAT
TTCTGGCATCGCCCAGCACAAACTGTGTCAACTGCTCCAGAACACAGAATGGATCGACAAAGTGTACCTACCCACCAATT
GCTACCGGCTCCGGGAAGCTCACAAGTACATCACTGCCGAGCTGAAGGCATTGGAGATCCCTTTTCACAACCGCAGCTCT
GGCCTCTATGTCTGGATCAACTTGAAAAAGTACCTGGATCCCTGTACATTTGAAGAAGAACGGCTCCTCTATTGCCGCTT
CCTGAAAAACAAGTTATTGTTATCCTGTGGCAAAACCTATATGTGTAAGGAGCCAGGCTGGTTCCGCCTCATCTTTGCAG
ATGAGCTCCCCCGGCTAAAATTGGCCATGCGTCGGTTCTGTGACGTGCTGCAGGAACAGAAGGAGGCTTTGATAGTGAAG
CAGTTGGAGGATGCAATGAGGGAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .03 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000011384 ortholog_one2many 1 retrogene
retro_cjac_100,
Dipodomys ordii ENSDORG00000005058 ortholog_one2one 1 retrogene
retro_dord_340,
Equus caballus ENSECAG00000011908 ortholog_one2one 1 retrogene
retro_ecab_575,
Echinops telfairi ENSETEG00000009026 ortholog_one2one 2 retrogenes
retro_etel_1006, retro_etel_204,
Homo sapiens ENSG00000205126 ortholog_one2one 1 retrogene
retro_hsap_3553,
Myotis lucifugus ENSMLUG00000005151 ortholog_one2one 1 retrogene
retro_mluc_1235,
Nomascus leucogenys ENSNLEG00000017966 ortholog_one2one 1 retrogene
retro_nleu_2326,
Ochotona princeps ENSOPRG00000002097 ortholog_one2many 1 retrogene
retro_opri_526,
Ochotona princeps ENSOPRG00000006805 ortholog_one2many 7 retrogenes
retro_opri_1064, retro_opri_1151, retro_opri_251, retro_opri_252, retro_opri_398, retro_opri_399, retro_opri_808,
Pan troglodytes ENSPTRG00000028662 ortholog_one2one 1 retrogene
retro_ptro_2414,
Tupaia belangeri ENSTBEG00000016623 ortholog_one2one 1 retrogene
retro_tbel_3677,
Tursiops truncatus ENSTTRG00000002727 ortholog_one2one 1 retrogene
retro_ttru_1321,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2934 82.93 64.44
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Download FASTA sequences of all ENSPPYG00000003340 retrocopies