Parental gene: | HTATIP2, ENSPPYG00000003421 |
| Aliases: | None |
| Description: | HIV-1 Tat interactive protein 2, 30kDa [Source:HGNC Symbol;Acc:16637] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:49680710..49700365(-) |
>ENSPPYG00000003421
ATGGCCGAAACAGAAGCACTGTCGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTTTGGGCGCCAG
CGGAGAAACCGGCAGAGTGCTCTTAAAGGAAATCCTGGAGCAGGGCCTGTTTTCCAAAGTCACGCTCATTGGCCGGAGGA
AGCTCACCTTCGACGAGGAAGCTTATAAAAATGTGAATCAAGAAGTGGTGGACAGATTTGAAAAGTTGGATGACTACGCT
TCTGCCTTTCAAGGTCATGATGTTGGATTCTGTTGCCTGGGTACCACCAGAGTGAAAGCTGGGGCGGAGGGATTTGTTCG
TGTTGACCGAGATTATGTGCTGAAGTCTGCAGAGCTGGCAAAAGCTGGAGGGTGCAAACATTTCAACTTGCTATCCTCTA
AAGGAGCTGATAAATCAAGCAATTTTTTATATCTACAAGTTAAGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTT
GATCGTTACTCTGTATTTAGGCCTGGAGTTCTGTTATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGCTGGTTAGAAA
GTTCTTTGGCTCCTTACCAGAGTCTTGGGCCAGTGGGTATTCTGTACCTGTGGTGACTGTGGTTAGAGCAATGCTGAACA
ATATGGTGAGACCAAGAGACAAGCAGATGGAACTGCTGGAGAACAAGGCCATCCATGACCTGGGGAAAGTGCATGGCTCT
CTCAAGCCATGA
ATGGCCGAAACAGAAGCACTGTCGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTTTGGGCGCCAG
CGGAGAAACCGGCAGAGTGCTCTTAAAGGAAATCCTGGAGCAGGGCCTGTTTTCCAAAGTCACGCTCATTGGCCGGAGGA
AGCTCACCTTCGACGAGGAAGCTTATAAAAATGTGAATCAAGAAGTGGTGGACAGATTTGAAAAGTTGGATGACTACGCT
TCTGCCTTTCAAGGTCATGATGTTGGATTCTGTTGCCTGGGTACCACCAGAGTGAAAGCTGGGGCGGAGGGATTTGTTCG
TGTTGACCGAGATTATGTGCTGAAGTCTGCAGAGCTGGCAAAAGCTGGAGGGTGCAAACATTTCAACTTGCTATCCTCTA
AAGGAGCTGATAAATCAAGCAATTTTTTATATCTACAAGTTAAGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTT
GATCGTTACTCTGTATTTAGGCCTGGAGTTCTGTTATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGCTGGTTAGAAA
GTTCTTTGGCTCCTTACCAGAGTCTTGGGCCAGTGGGTATTCTGTACCTGTGGTGACTGTGGTTAGAGCAATGCTGAACA
ATATGGTGAGACCAAGAGACAAGCAGATGGAACTGCTGGAGAACAAGGCCATCCATGACCTGGGGAAAGTGCATGGCTCT
CTCAAGCCATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 1 .77 RPM |
| SRP007412_cerebellum | 2 .07 RPM |
| SRP007412_heart | 0 .84 RPM |
| SRP007412_kidney | 3 .35 RPM |
| SRP007412_liver | 3 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006718 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000018703 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000000749 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000011216 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1288 | 93.88 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000003421 retrocopies