Parental gene: | EIF3F, ENSPPYG00000003512 |
| Aliases: | None |
| Description: | eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:62296580..62310087(-) |
>ENSPPYG00000003512
ATGGCCACACCGGTGGTACCGGCGAGTGCTCCTCCGGCCACGCCAGCCCCAGTCCCGGCGGCGGCTCCAGCCTCGGCCCC
AGCCTCGGTTCCAGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCTTCAGACCCTG
CGACAGCAGCGGCTACAACTGCGGCTCCTGGTCAGACCCCGGCCTCAGCGCAAGCTCCAGCGCAGACCCCAGCGCCCGCT
CTGCCTGGTCCTGCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGT
GGACAGCTACGAGAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGG
AGGTCACCAATTGCTTTTCAGTGCCGCACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATG
TATGAACTGCATAAAAAAGTTTCTCCAAATGAGCTCATCCTGGGCTGGTACGCTACAGGCCATGACATCACAGAGCACTC
TGTGCTGATCCATGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCC
GCATGAGCATCAAAGCCTATGTCAGCACTTTAATGGGCGTCCCTGGGAGGACCATGGGAGTGATGTTCACACCTCTGACA
GTGAAATACGCGTACTATGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGAT
TGGACTCTCAAGTGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGCACAGTGTTGCAATATG
CAGAGGATGTACTGTCTGGAAAGGTGTCAGCTGACAATACTGTGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCA
AAAATAGTTCCCGATGACTTCGAGACCATGCTCAACAGCAACATCAATGACCTGTTGATGGTGACCTACCTGGCCAACCT
CACACAGTCACAGATCGCCCTCAATGAAAAACTCGTAAACCTGTGA
ATGGCCACACCGGTGGTACCGGCGAGTGCTCCTCCGGCCACGCCAGCCCCAGTCCCGGCGGCGGCTCCAGCCTCGGCCCC
AGCCTCGGTTCCAGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCTTCAGACCCTG
CGACAGCAGCGGCTACAACTGCGGCTCCTGGTCAGACCCCGGCCTCAGCGCAAGCTCCAGCGCAGACCCCAGCGCCCGCT
CTGCCTGGTCCTGCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGT
GGACAGCTACGAGAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGG
AGGTCACCAATTGCTTTTCAGTGCCGCACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATG
TATGAACTGCATAAAAAAGTTTCTCCAAATGAGCTCATCCTGGGCTGGTACGCTACAGGCCATGACATCACAGAGCACTC
TGTGCTGATCCATGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCC
GCATGAGCATCAAAGCCTATGTCAGCACTTTAATGGGCGTCCCTGGGAGGACCATGGGAGTGATGTTCACACCTCTGACA
GTGAAATACGCGTACTATGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGAT
TGGACTCTCAAGTGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGCACAGTGTTGCAATATG
CAGAGGATGTACTGTCTGGAAAGGTGTCAGCTGACAATACTGTGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCA
AAAATAGTTCCCGATGACTTCGAGACCATGCTCAACAGCAACATCAATGACCTGTTGATGGTGACCTACCTGGCCAACCT
CACACAGTCACAGATCGCCCTCAATGAAAAACTCGTAAACCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 36 .88 RPM |
| SRP007412_cerebellum | 50 .22 RPM |
| SRP007412_heart | 39 .86 RPM |
| SRP007412_kidney | 63 .91 RPM |
| SRP007412_liver | 59 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000004861 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000006884 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011903 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002717 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000825 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015010 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004225 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003220 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000025918 | within_species_paralog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000015764 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_175 | 96.68 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000003512 retrocopies