Parental gene:

EIF3F, ENSPPYG00000003512

Aliases:None
Description:eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275]
Organism:Orangutan (Pongo abelii)
Coordinates:11:62296580..62310087(-)


>ENSPPYG00000003512
ATGGCCACACCGGTGGTACCGGCGAGTGCTCCTCCGGCCACGCCAGCCCCAGTCCCGGCGGCGGCTCCAGCCTCGGCCCC
AGCCTCGGTTCCAGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCTTCAGACCCTG
CGACAGCAGCGGCTACAACTGCGGCTCCTGGTCAGACCCCGGCCTCAGCGCAAGCTCCAGCGCAGACCCCAGCGCCCGCT
CTGCCTGGTCCTGCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGCTGCACCCAGTCATTTTGGCCTCCATTGT
GGACAGCTACGAGAGACGCAACGAGGGTGCTGCCCGAGTTATCGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGG
AGGTCACCAATTGCTTTTCAGTGCCGCACAATGAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATG
TATGAACTGCATAAAAAAGTTTCTCCAAATGAGCTCATCCTGGGCTGGTACGCTACAGGCCATGACATCACAGAGCACTC
TGTGCTGATCCATGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCC
GCATGAGCATCAAAGCCTATGTCAGCACTTTAATGGGCGTCCCTGGGAGGACCATGGGAGTGATGTTCACACCTCTGACA
GTGAAATACGCGTACTATGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTTTAGCCCCAACAGAGTGAT
TGGACTCTCAAGTGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAGGATGCCCTGAGCACAGTGTTGCAATATG
CAGAGGATGTACTGTCTGGAAAGGTGTCAGCTGACAATACTGTGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCA
AAAATAGTTCCCGATGACTTCGAGACCATGCTCAACAGCAACATCAATGACCTGTTGATGGTGACCTACCTGGCCAACCT
CACACAGTCACAGATCGCCCTCAATGAAAAACTCGTAAACCTGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 36 .88 RPM
SRP007412_cerebellum 50 .22 RPM
SRP007412_heart 39 .86 RPM
SRP007412_kidney 63 .91 RPM
SRP007412_liver 59 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004861 ortholog_one2many 1 retrogene
retro_btau_527,
Canis familiaris ENSCAFG00000006884 ortholog_one2one 1 retrogene
retro_cfam_1339,
Callithrix jacchus ENSCJAG00000011903 ortholog_one2one 1 retrogene
retro_cjac_1416,
Echinops telfairi ENSETEG00000002717 possible_ortholog 2 retrogenes
retro_etel_1583, retro_etel_35,
Myotis lucifugus ENSMLUG00000000825 possible_ortholog 1 retrogene
retro_mluc_2356,
Macaca mulatta ENSMMUG00000015010 ortholog_one2one 1 retrogene
retro_mmul_412,
Oryctolagus cuniculus ENSOCUG00000004225 possible_ortholog 1 retrogene
retro_ocun_1488,
Otolemur garnettii ENSOGAG00000003220 possible_ortholog 3 retrogenes
retro_ogar_3041, retro_ogar_859, retro_ogar_863,
Pongo abelii ENSPPYG00000025918 within_species_paralog 1 retrogene
retro_pabe_418,
Pteropus vampyrus ENSPVAG00000015764 possible_ortholog 1 retrogene
retro_pvam_371,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_175 96.68 100.00
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Download FASTA sequences of all ENSPPYG00000003512 retrocopies