Parental gene:

TPI1, ENSPPYG00000004207

Aliases:None
Description:triosephosphate isomerase 1 [Source:HGNC Symbol;Acc:12009]
Organism:Orangutan (Pongo abelii)
Coordinates:12:7097997..7100838(+)


>ENSPPYG00000004207
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCTCCTTGCCGGCGGCCACGTCCCCGCAC
CGAGCTGCTCGGGGTCCCTGAGCCCCCAGATCTGACCCCTTCCCTTCGGCAACCTGAGCGACTCCCGCCTTCCACGGAAG
GGACCGAGCCGGTGCCAAACAGGCTGAGCGATTTGAGAGTGAGGAGCCATCCTACCGCCTTCCCCAACCTGGAAACGGCA
AAGTGCAAGGCCTCTGAGTCAGTTAGGTCTCTGCCGCCCACGGGCAAAAAGGATGCTCTCCTCCATCCTCCTCCTTCCCT
CCACCGAAATCGGAGAGCCGCGGGCCTGATCCAAAGAGGCATCCCCTTCTCGTTCATTCCCCAGAGGCCTCAATACAAAC
CCCAGGAGTTGGCCCCTCTCCTTTTGCTACAAATCCTTGCCTTGCAAAGGAGAGAGGTGGTTTGTGCTCCCCCTACTGCC
TATATCGACTTCGCCCGGCAGAAGCTAGATCCCAAGATTGCTGTGGCTGCGCAGAACTGCTACAAAGTGACTAATGGGGC
CTTTACTGGGGAGATCAGCCCTGGCATGATCAAAGACTGCGGAGCCACGTGGGTGGTCCTGGGGCACTCAGAGAGAAGGC
ATGTCTTTGGGGAGTCAGATGAGCTGATTGGGCAGAAAGTGGCCCATGCTCTGGCAGAGGGACTCGGAGTAATCGCCTGC
ATTGGGGAGAAGCTAGATGAAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTTGAGCAGACAAAGGTCATCGCAGATAA
TGTGAAGGACTGGAGCAAGGTCGTCCTGGCCTATGAGCCTGTGTGGGCCATTGGTACTGGCAAGACTGCAACACCCCAAC
AGGCCCAGGAAGTACACGAGAAGCTCCGAGGATGGCTTAAGTCCAACGTCTCTGATGCGGTGGCTCAGAGCACCCGTATC
ATTTATGGAGGCTCTGTGACTGGGGCAACCTGCAAGGAGCTGGCCAGCCAGCCTGACGTGGATGGCTTCCTTGTGGGTGG
TGCTTCCCTCAAGCCCGAATTCGTGGACATCATCAATGCCAAACAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 472 .24 RPM
SRP007412_cerebellum 295 .37 RPM
SRP007412_heart 287 .07 RPM
SRP007412_kidney 295 .27 RPM
SRP007412_liver 271 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007348 ortholog_one2one 2 retrogenes
retro_cjac_2190, retro_cjac_2370,
Gorilla gorilla ENSGGOG00000002623 ortholog_one2one 1 retrogene
retro_ggor_151,
Macropus eugenii ENSMEUG00000006977 ortholog_one2many 5 retrogenes
retro_meug_1348, retro_meug_1520, retro_meug_1934, retro_meug_267, retro_meug_512,
Myotis lucifugus ENSMLUG00000024989 ortholog_one2many 4 retrogenes
retro_mluc_1090, retro_mluc_1311, retro_mluc_1777, retro_mluc_1807,
Macaca mulatta ENSMMUG00000005194 ortholog_one2many 2 retrogenes
retro_mmul_1864, retro_mmul_250,
Mustela putorius furo ENSMPUG00000016774 ortholog_many2many 1 retrogene
retro_mputfur_136,
Mus musculus ENSMUSG00000023456 ortholog_one2many 4 retrogenes
retro_mmus_1180, retro_mmus_3260, retro_mmus_532, retro_mmus_558,
Nomascus leucogenys ENSNLEG00000004821 ortholog_one2one 2 retrogenes
retro_nleu_1120, retro_nleu_847,
Otolemur garnettii ENSOGAG00000031254 ortholog_one2many 1 retrogene
retro_ogar_109,
Rattus norvegicus ENSRNOG00000015290 ortholog_many2many 1 retrogene
retro_rnor_1304,
Rattus norvegicus ENSRNOG00000050669 ortholog_many2many 2 retrogenes
retro_rnor_2615, retro_rnor_787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2902 83.33 54.14
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000004207 retrocopies