Parental gene:

TPI1, ENSCJAG00000007348

Aliases:None
Description:triosephosphate isomerase 1 [Source:HGNC Symbol;Acc:12009]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:18724946..18728995(+)


>ENSCJAG00000007348
ATGGCGGAGGACGGCGAGGAGGCGGAGTTCCACTTCGCGGCGCTCTATATAAGCGGGCAGTGGCCGCGGCTGCGCGCTGA
CACTGACCTTCAGTGCCTCGGTTCCAGCGCCATGGCTCCCTCCAGGAAGTTCTTCGTCGGTGGGAACTGGAAGATGAACG
GGAGGAAGCAGAATCTGGGGGAGCTCATCGGCACTCTGAACGCGGCCAAGGTGCCGGGAGACACCGAGGTGGTTTGTGCT
CCCCCCACTGCCTATATCGACTTCGCCCGGCAGAAGCTAGATCCCAAGATTGCTGTGGCTGCGCAGAACTGCTACAAAGT
GTCTAACGGGGCCTTTACTGGGGAGATCAGCCCTGGCATGATCAAAGACTGCGGAGCCACATGGGTGGTCCTGGGGCACT
CAGAGAGAAGGCATGTCTTCGGGGAGTCAGATGAGCTGATTGGGCAGAAAGTGGCCCATGCTCTGGCAGAGGGACTCGGA
GTAATCGCCTGCATTGGGGAGAAGCTAGATGAAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTCGAGCAGACAAAGGT
CATTGCAGATAATGTGAAGGACTGGAGCAAGGTCGTCCTGGCCTATGAGCCTGTGTGGGCCATTGGCACGGGCAAGACTG
CAACACCCCAACAGGCCCAGGAAGTACACGAGAAGCTCCGAGGGTGGCTTAAGTCCAATGTCTCTGATGCAGTGGCTCAG
AGCACCCGTATCATTTATGGAGGCTCTGTGACCGGGGCAACCTGCAAGGAGCTGGCCAGCCAGCCTGATGTGGATGGCTT
CCTCGTGGGTGGTGCTTCCCTCAAACCCGAATTCGTGGACATCATCAATGCCAAACAATGA

Library Parental gene expression (RPM)
SRP051959_colon 70 .80 RPM
SRP051959_heart 75 .42 RPM
SRP051959_kidney 79 .87 RPM
SRP051959_liver 82 .57 RPM
SRP051959_lung 32 .81 RPM
SRP051959_lymph_node 41 .23 RPM
SRP051959_skeletal_muscle 236 .59 RPM
SRP051959_spleen 41 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000111669 ortholog_one2one 3 retrogenes
retro_hsap_3038, retro_hsap_3510, retro_hsap_3784,
Gorilla gorilla ENSGGOG00000002623 ortholog_one2many 1 retrogene
retro_ggor_151,
Macropus eugenii ENSMEUG00000006977 ortholog_one2one 5 retrogenes
retro_meug_1348, retro_meug_1520, retro_meug_1934, retro_meug_267, retro_meug_512,
Myotis lucifugus ENSMLUG00000024989 ortholog_one2one 4 retrogenes
retro_mluc_1090, retro_mluc_1311, retro_mluc_1777, retro_mluc_1807,
Macaca mulatta ENSMMUG00000005194 ortholog_one2many 2 retrogenes
retro_mmul_1864, retro_mmul_250,
Mustela putorius furo ENSMPUG00000016774 ortholog_one2many 1 retrogene
retro_mputfur_136,
Mus musculus ENSMUSG00000023456 ortholog_one2one 4 retrogenes
retro_mmus_1180, retro_mmus_3260, retro_mmus_532, retro_mmus_558,
Nomascus leucogenys ENSNLEG00000004821 ortholog_one2one 2 retrogenes
retro_nleu_1120, retro_nleu_847,
Otolemur garnettii ENSOGAG00000031254 ortholog_one2many 1 retrogene
retro_ogar_109,
Pongo abelii ENSPPYG00000004207 ortholog_one2one 1 retrogene
retro_pabe_2902,
Pan troglodytes ENSPTRG00000004595 ortholog_one2one 4 retrogenes
retro_ptro_160, retro_ptro_1999, retro_ptro_2382, retro_ptro_2565,
Rattus norvegicus ENSRNOG00000015290 ortholog_one2many 1 retrogene
retro_rnor_1304,
Rattus norvegicus ENSRNOG00000050669 ortholog_one2many 2 retrogenes
retro_rnor_2615, retro_rnor_787,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2190 79.09 90.91
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2. retro_cjac_2370 78.28 90.91
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Download FASTA sequences of all ENSCJAG00000007348 retrocopies