Parental gene: | CTDSP2, ENSPPYG00000004711 |
| Aliases: | None |
| Description: | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:HGNC Symbol;Acc:17077] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:57655681..57680057(-) |
>ENSPPYG00000004711
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGTCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGCGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCCGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTAGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCTTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGGAAGACCC
TCATCCTGGACAACTCGCCTGCTTCTTACATATTCCACCCCGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACTGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGGC
TGCGGGCCCCTTAGCCTGCCCTGCTTCCAAGCGATGGCCATCCCAGTAG
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGTCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGCGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCCGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTAGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCTTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGGAAGACCC
TCATCCTGGACAACTCGCCTGCTTCTTACATATTCCACCCCGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACTGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGGC
TGCGGGCCCCTTAGCCTGCCCTGCTTCCAAGCGATGGCCATCCCAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 10 .78 RPM |
| SRP007412_cerebellum | 16 .42 RPM |
| SRP007412_heart | 9 .99 RPM |
| SRP007412_kidney | 25 .49 RPM |
| SRP007412_liver | 10 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006503 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000175215 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005321 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000078429 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017164 | ortholog_one2one | 2 retrogenes | |
| Petromyzon marinus | ENSPMAG00000009544 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005155 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1708 | 63.25 | 58.16 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1739 | 63.25 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1740 | 63.86 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1742 | 67.47 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1746 | 62.05 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_1762 | 66.67 | 56.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_2402 | 60.98 | 56.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pabe_2592 | 66.05 | 56.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_pabe_3202 | 62.50 | 58.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_pabe_3205 | 60.84 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_pabe_3221 | 65.22 | 56.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_pabe_3237 | 65.06 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_pabe_3554 | 61.88 | 56.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_pabe_3578 | 65.06 | 58.16 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004711 retrocopies