Parental gene:

CTDSP2, ENSG00000175215

Aliases:CTDSP2, OS4, PSR2, SCP2
Description:CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:HGNC Symbol;Acc:17077]
Organism:Human (Homo sapiens)
Coordinates:12:58213709..58240522(-)


>ENSG00000175215
ATGGAACACGGCTCCATCATCACCCAGGCGCGGAGGGAAGACGCCCTGGTGCTCACCAAGCAAGGCCTGGTCTCCAAGTC
CTCTCCTAAGAAGCCTCGTGGACGTAACATCTTCAAGGCCCTTTTCTGCTGTTTTCGCGCCCAGCATGTTGGCCAGTCAA
GTTCCTCCACTGAGCTCGCTGCGTATAAGGAGGAAGCAAACACCATTGCTAAGTCGGATCTGCTCCAGTGTCTCCAGTAC
CAGTTCTACCAGATCCCAGGGACCTGCCTGCTCCCAGAGGTGACAGAGGAAGATCAAGGAAGGATCTGTGTGGTCATTGA
CCTCGATGAAACCCTTGTGCATAGCTCCTTTAAGCCAATCAACAATGCTGACTTCATAGTGCCTATAGAGATTGAGGGGA
CCACTCACCAGGTGTATGTGCTCAAGAGGCCTTATGTGGATGAGTTCCTGAGACGCATGGGGGAACTCTTTGAATGTGTT
CTCTTCACTGCCAGCCTGGCCAAGTATGCCGACCCTGTGACAGACCTGCTGGACCGGTGTGGGGTGTTCCGGGCCCGCCT
ATTCCGTGAGTCTTGCGTGTTCCACCAGGGCTGCTACGTCAAGGACCTCAGCCGCCTGGGGAGGGACCTGAGAAAGACCC
TCATCCTGGACAACTCGCCTGCTTCTTACATATTCCACCCCGAGAATGCAGTGCCTGTGCAGTCCTGGTTTGATGACATG
GCAGACACTGAGTTGCTGAACCTGATCCCAATCTTTGAGGAGCTGAGCGGAGCAGAGGACGTCTACACCAGCCTTGGGCA
GCTGCGGGCCCCTTAG

Library Parental gene expression (RPM)
bodymap2_liver 91 .02 RPM
bodymap2_lung 266 .49 RPM
bodymap2_breast 177 .55 RPM
bodymap2_adipose 209 .37 RPM
bodymap2_adrenal 163 .69 RPM
bodymap2_skeletal_muscle 176 .11 RPM
bodymap2_thyroid 167 .05 RPM
bodymap2_prostate 235 .35 RPM
bodymap2_colon 221 .59 RPM
bodymap2_testis 103 .56 RPM
bodymap2_brain 59 .23 RPM
bodymap2_heart 120 .61 RPM
bodymap2_white_blood_cells 473 .67 RPM
bodymap2_lymph_node 290 .83 RPM
bodymap2_ovary 211 .26 RPM
bodymap2_kidney 140 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006503 ortholog_one2many 2 retrogenes
retro_cjac_3087, retro_cjac_919,
Homo sapiens ENSG00000137770 within_species_paralog 1 retrogene
retro_hsap_4881,
Macaca mulatta ENSMMUG00000005321 ortholog_one2one 2 retrogenes
retro_mmul_2208, retro_mmul_764,
Mus musculus ENSMUSG00000078429 ortholog_one2one 1 retrogene
retro_mmus_612,
Nomascus leucogenys ENSNLEG00000017164 ortholog_one2one 2 retrogenes
retro_nleu_1741, retro_nleu_3079,
Petromyzon marinus ENSPMAG00000009544 ortholog_one2one 2 retrogenes
retro_pmar_20, retro_pmar_27,
Pongo abelii ENSPPYG00000004711 ortholog_one2one 14 retrogenes
retro_pabe_1708, retro_pabe_1739, retro_pabe_1740, retro_pabe_1742, retro_pabe_1746, retro_pabe_1762, retro_pabe_2402, retro_pabe_2592, retro_pabe_3202, retro_pabe_3205, retro_pabe_3221, retro_pabe_3237, retro_pabe_3554, retro_pabe_3578,
Pan troglodytes ENSPTRG00000005155 ortholog_one2one 7 retrogenes
retro_ptro_2587, retro_ptro_2589, retro_ptro_2590, retro_ptro_2592, retro_ptro_2594, retro_ptro_2958, retro_ptro_3054,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4315 71.08 60.52
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2. retro_hsap_4319 71.08 60.52
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Download FASTA sequences of all ENSG00000175215 retrocopies