Parental gene: | NAP1L1, ENSPPYG00000004786 |
| Aliases: | None |
| Description: | nucleosome assembly protein 1-like 1 [Source:RefSeq peptide;Acc:NP_001126986] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:76538698..76579783(-) |
>ENSPPYG00000004786
ATGGCAGACATTGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAGGAAAC
TGGTGAAGAAACAAAAATCAAAGCACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAG
AAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAGCCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCT
CTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTATGC
TGTTCTCTATCAGCCTCTATTTGATAAGCGATTTGAAATTATTAATGCAATTTATGAACCTACGGAAGAAGAATGTGAAT
GGAAACCAGATGAAGAAGATGAGATTTCGGAGGAATTGAAAGAAAAGGCGAAGATTGAAGATGAGAAAAAGGATGAAGAA
AAAGAAGACCCCAAAGGAATTCCTGAATTTTGGTTAACTGTTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGA
ACACGATGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTCTCAGATGCTGGCCAGCCTATGAGTTTTGTCT
TAGAATTTCACTTTGAACCCAATGAATATTTTACAAATGAAGTGCTGACAAAGACATACAGGATGAGGTCAGAACCAGAT
GATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGATTGGAAAAAAGGAAAGAA
TGTCACTTTGAAAACTATTAAGAAGAAGCAGAAACACAAGGGACGTGGGACAGTTCGTACTGTGACTAAAACAGTTTCCA
ATGACTCTTTCTTTAACTTTTTTGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATCCTT
GCTGCAGACTTCGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTACTGGAGAAGCTAT
TGAAGATGATGATGATGATTATGATGAAGAAGGTGAAGAAGCGGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATG
ATCCAGACTATGACCCAAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGA
ATGGCAGACATTGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAGGAAAC
TGGTGAAGAAACAAAAATCAAAGCACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAG
AAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAGCCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCT
CTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTATGC
TGTTCTCTATCAGCCTCTATTTGATAAGCGATTTGAAATTATTAATGCAATTTATGAACCTACGGAAGAAGAATGTGAAT
GGAAACCAGATGAAGAAGATGAGATTTCGGAGGAATTGAAAGAAAAGGCGAAGATTGAAGATGAGAAAAAGGATGAAGAA
AAAGAAGACCCCAAAGGAATTCCTGAATTTTGGTTAACTGTTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGA
ACACGATGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTCTCAGATGCTGGCCAGCCTATGAGTTTTGTCT
TAGAATTTCACTTTGAACCCAATGAATATTTTACAAATGAAGTGCTGACAAAGACATACAGGATGAGGTCAGAACCAGAT
GATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGATTGGAAAAAAGGAAAGAA
TGTCACTTTGAAAACTATTAAGAAGAAGCAGAAACACAAGGGACGTGGGACAGTTCGTACTGTGACTAAAACAGTTTCCA
ATGACTCTTTCTTTAACTTTTTTGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATCCTT
GCTGCAGACTTCGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTACTGGAGAAGCTAT
TGAAGATGATGATGATGATTATGATGAAGAAGGTGAAGAAGCGGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATG
ATCCAGACTATGACCCAAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 163 .33 RPM |
| SRP007412_cerebellum | 115 .52 RPM |
| SRP007412_heart | 91 .70 RPM |
| SRP007412_kidney | 113 .56 RPM |
| SRP007412_liver | 66 .90 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020908 | possible_ortholog | 8 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000003210 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001115 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013702 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000015583 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000020456 | ortholog_one2many | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017474 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000058799 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002938 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003890 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_999 | 83.75 | 90.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2287 | 77.97 | 73.15 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004786 retrocopies