RetrogeneDB ID: | retro_btau_935 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 21:40889828..40890801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000027863 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSBTAG00000020908 | ||
Aliases: | None | ||
Description: | Nucleosome assembly protein 1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:A6H767] |
Percent Identity: | 89.26 % |
Parental protein coverage: | 83.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERK-YAVLYQPLFDKRFEIINAIYEPTEEECEW |
.I..LPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERK.YAVLYQPLFDKRF.IINAIYEPTEEECEW | |
Retrocopy | HIDNLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERK>YAVLYQPLFDKRFVIINAIYEPTEEECEW |
Parental | KPDEEDEISEELKEKAKVEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFS |
KPDEEDEISEE..................PKG.PEF.LTVFKNVDLLSDMV.EHDEPILKHLKDIKVKFS | |
Retrocopy | KPDEEDEISEEXXXXXXXXXXXXXXXXXXPKGLPEF*LTVFKNVDLLSDMV*EHDEPILKHLKDIKVKFS |
Parental | DAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIK |
DAGQPMSFVLEFHFEPNEY.TNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLK.IK | |
Retrocopy | DAGQPMSFVLEFHFEPNEYITNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKMIK |
Parental | KKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDSEAILAADFEIGHFLRERIIPRSVLYFTG |
KKQKHKG.GTVRTVTKTVSNDSFFNFFAPPEVPESGD.DDDSEAIL.ADFEIGHFLRE.IIPRSVL.FTG | |
Retrocopy | KKQKHKGHGTVRTVTKTVSNDSFFNFFAPPEVPESGDVDDDSEAILTADFEIGHFLREHIIPRSVLCFTG |
Parental | EAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQ |
EAIE.DDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAE.KQ | |
Retrocopy | EAIE-DDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAERKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 23 .14 RPM |
ERP005899_muscle | 0 .00 RPM | 187 .24 RPM |
SRP017611_brain | 0 .05 RPM | 93 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 64 .37 RPM |
SRP017611_liver | 0 .00 RPM | 26 .05 RPM |
SRP030211_testis | 0 .03 RPM | 113 .21 RPM |