Parental gene: | NAP1L1, ENSBTAG00000020908 |
| Aliases: | None |
| Description: | Nucleosome assembly protein 1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:A6H767] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 5:5575919..5612121(-) |
>ENSBTAG00000020908
ATGGCAGACATCGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAAGAAAC
TGGTGAAGAAACAAAAATCAAAGCGCGTCAGCTGACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAG
AAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAGCTTGCCTAGGGTAGTTAAAAGACGAGTGAATGCT
CTCAAAAACCTTCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCATGATCTTGAAAGAAAGTATGC
TGTTCTTTATCAGCCTCTGTTTGATAAGCGATTTGAGATCATTAATGCCATTTATGAACCTACAGAAGAAGAGTGTGAAT
GGAAACCAGATGAGGAAGATGAAATTTCGGAGGAGCTAAAAGAAAAGGCCAAGGTTGAAGATGAGAAAAAGGATGAAGAA
AAAGAAGATCCCAAGGGAATTCCTGAGTTTTGGTTGACCGTTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGA
ACATGATGAGCCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTCTCAGATGCTGGTCAGCCTATGAGTTTTGTCT
TAGAATTTCACTTTGAACCCAATGAATATTTCACAAATGAAGTGTTGACAAAGACATATAGGATGAGGTCAGAACCAGAT
GATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGATTGGAAAAAAGGGAAGAA
TGTCACTTTGAAAACGATTAAGAAGAAGCAGAAACACAAGGGACGTGGGACAGTTCGTACTGTGACCAAAACAGTTTCTA
ATGACTCTTTCTTTAATTTTTTTGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATTCTGAAGCTATCCTC
GCTGCAGACTTTGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATACTTTACTGGAGAAGCTAT
TGAAGACGATGACGATGATTATGATGAAGAAGGTGAAGAAGCGGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATG
ATCCAGACTATGACCCAAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| ERP005899_liver | 23 .14 RPM |
| ERP005899_muscle | 187 .24 RPM |
| SRP017611_brain | 93 .19 RPM |
| SRP017611_kidney | 64 .37 RPM |
| SRP017611_liver | 26 .05 RPM |
| SRP030211_testis | 113 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000003210 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001115 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000000279 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000187109 | possible_ortholog | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003883 | possible_ortholog | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000013702 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000015583 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000020456 | ortholog_many2many | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017474 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000058799 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004682 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013857 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010319 | possible_ortholog | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000004786 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005240 | possible_ortholog | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016032 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003890 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000003046 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000017062 | possible_ortholog | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000007290 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_70 | 96.45 | 100.00 | Please wait, loading  |
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| 2. | retro_btau_474 | 85.28 | 83.12 | Please wait, loading |
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| 3. | retro_btau_652 | 99.72 | 92.84 | Please wait, loading |
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| 4. | retro_btau_935 | 89.26 | 83.12 | Please wait, loading |
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| 5. | retro_btau_1319 | 92.58 | 100.00 | Please wait, loading |
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| 6. | retro_btau_1324 | 91.30 | 100.00 | Please wait, loading |
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| 7. | retro_btau_1462 | 99.49 | 100.00 | Please wait, loading |
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| 8. | retro_btau_1487 | 92.88 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSBTAG00000020908 retrocopies