Parental gene: | UNG, ENSPPYG00000004929 |
| Aliases: | None |
| Description: | uracil-DNA glycosylase [Source:HGNC Symbol;Acc:12572] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:110866942..110881464(+) |
>ENSPPYG00000004929
ATGATCGGCCAGAAGACGCTCTACTCCTTTTTCTCCCCTAGCCCCGCCAGGAAGCGACGCGCCCCCAGCCCCGAGCCGGC
CGTCCTGGGGACCGGCGTGGCTGGGGTGCCTGAGGAAAGCGGAGATGCGGCGGCCATCCCAGCCAAGAAGGCCCCGGCTG
GGCAGGAGGAGTCCGGGACGCCGCCCTCCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCCAGAGGAACAAGGCCGCG
GCCCTGCTCAGACTCGCGGCCCGCAACGTGCCCGTGGGCTTTGGAGAGAGCTGGAAGAAGCACCTCAGCGGGGAGTTCGG
GAAACCGTATTTTATCAAGCTAATGGGATTTGTTGCAGAAGAAAGAAAGCATTACACTGTTTATCCACCCCCACACCAAG
TCTTCACCTGGACCCAGATGTGTGACATAAAAGATGTGAAGGTTGTCATCCTGGGACAGGATCCATATCATGGACCTAAT
CAAGCTCACGGGCTCTGCTTTAGTGTTCAGAGGCCTGTTCCGCCTCCGCCCAGTTTGGAGAACATTTATAAAGAGCTGTC
TACAGCTTTAGAGGGTTTTGTTCATCCTGGCCATGGAGATTTATCCCCCCTTCCGAAGCAAGGTGTTCTCTTACTCAACG
CTGTCCTCACTGTTCGGGCCCATCAAGCCAACTCTCATAAGGAGCGAGGCTGGGAGCAATTCACCGATGCAGTTGTGTCC
TGGCTAAATCAGAACTCGAATGGCCTTGTTTTCTTGCTCTGGGGCTCTTATGCTCAGAAGAAGGGCAGTGCCATCGATAG
GAAGCGGCACCATGTACTACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGGTTCTTTGGATGTAGACACTTTT
CAAAGACCAATGAGCTGCTGCAGAAGTCTGGCAAGAAGCCCATCGACTGGAAGGAGCTGTGA
ATGATCGGCCAGAAGACGCTCTACTCCTTTTTCTCCCCTAGCCCCGCCAGGAAGCGACGCGCCCCCAGCCCCGAGCCGGC
CGTCCTGGGGACCGGCGTGGCTGGGGTGCCTGAGGAAAGCGGAGATGCGGCGGCCATCCCAGCCAAGAAGGCCCCGGCTG
GGCAGGAGGAGTCCGGGACGCCGCCCTCCTCGCCGCTGAGTGCCGAGCAGTTGGACCGGATCCAGAGGAACAAGGCCGCG
GCCCTGCTCAGACTCGCGGCCCGCAACGTGCCCGTGGGCTTTGGAGAGAGCTGGAAGAAGCACCTCAGCGGGGAGTTCGG
GAAACCGTATTTTATCAAGCTAATGGGATTTGTTGCAGAAGAAAGAAAGCATTACACTGTTTATCCACCCCCACACCAAG
TCTTCACCTGGACCCAGATGTGTGACATAAAAGATGTGAAGGTTGTCATCCTGGGACAGGATCCATATCATGGACCTAAT
CAAGCTCACGGGCTCTGCTTTAGTGTTCAGAGGCCTGTTCCGCCTCCGCCCAGTTTGGAGAACATTTATAAAGAGCTGTC
TACAGCTTTAGAGGGTTTTGTTCATCCTGGCCATGGAGATTTATCCCCCCTTCCGAAGCAAGGTGTTCTCTTACTCAACG
CTGTCCTCACTGTTCGGGCCCATCAAGCCAACTCTCATAAGGAGCGAGGCTGGGAGCAATTCACCGATGCAGTTGTGTCC
TGGCTAAATCAGAACTCGAATGGCCTTGTTTTCTTGCTCTGGGGCTCTTATGCTCAGAAGAAGGGCAGTGCCATCGATAG
GAAGCGGCACCATGTACTACAGACGGCTCATCCCTCCCCTTTGTCAGTGTATAGAGGGTTCTTTGGATGTAGACACTTTT
CAAAGACCAATGAGCTGCTGCAGAAGTCTGGCAAGAAGCCCATCGACTGGAAGGAGCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .41 RPM |
| SRP007412_cerebellum | 12 .77 RPM |
| SRP007412_heart | 5 .18 RPM |
| SRP007412_kidney | 11 .70 RPM |
| SRP007412_liver | 12 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016525 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000011144 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010134 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000004634 | ortholog_one2many | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000005335 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000008080 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000008349 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000015792 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010755 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000006957 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000003463 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001442 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003145 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007441 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005419 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000009938 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006894 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1354 | 62.98 | 64.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1355 | 62.50 | 64.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2792 | 74.70 | 52.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004929 retrocopies