RetrogeneDB ID: | retro_ocun_1767 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018876:180064..180999(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UNG | ||
Ensembl ID: | ENSOCUG00000003145 | ||
Aliases: | None | ||
Description: | uracil-DNA glycosylase [Source:HGNC Symbol;Acc:12572] |
Percent Identity: | 92.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MIGQKTLYSFFSPSPAGKRHTRSPEPAAPGTGVAAATEESRDAEASPAKKARAGKDEPGTPPSSPLSPEQ |
MIGQKTLYSFFSPSPAGKRHTRSPEPAAPGT.VAAATEES.DAEASPAKKA.AGKDEPGTPPS.PLSPE. | |
Retrocopy | MIGQKTLYSFFSPSPAGKRHTRSPEPAAPGTSVAAATEESGDAEASPAKKAQAGKDEPGTPPSPPLSPE* |
Parental | LVRIQRNKAAALLRLAARNVPVGFGESWKKHLCGEFGKPYFIKLMGFVAEERKHHTVYPPPHQVFTWTQM |
LVRIQRN.A.ALLRLAARNV..GFGESWKKHLCGEFGKPYFIKLMGFVAEERKHHTVYPPPHQVFTWTQM | |
Retrocopy | LVRIQRNEAGALLRLAARNVAMGFGESWKKHLCGEFGKPYFIKLMGFVAEERKHHTVYPPPHQVFTWTQM |
Parental | CDIRDVKVVILGQDPYHGPSQAHGLCFSVQRPVPPPPSLENIYKELSTDIEGFVHPGHGDLSGWAKQGVL |
CDIRDVKVVILGQDPYHGP.QAHGLCFS.QRPVPPPPSLENI..ELST.IEGFVHPG.GDLSGWAKQGVL | |
Retrocopy | CDIRDVKVVILGQDPYHGPNQAHGLCFSIQRPVPPPPSLENI*EELSTNIEGFVHPGNGDLSGWAKQGVL |
Parental | LLNAVLTVRAHQPTSHKD-RGWEQFTDAVVSWLNHNSSGLVFLLWGSYAQRKGSAIDRKRHHVLQTAHPS |
LLN.VLTVRAHQPTSHKD.RGWE.FTDAVVSWLNHNSSGLVFLLWGSYAQRKGSAIDRKRH.VLQ.AHPS | |
Retrocopy | LLN-VLTVRAHQPTSHKD<RGWE*FTDAVVSWLNHNSSGLVFLLWGSYAQRKGSAIDRKRHDVLQMAHPS |
Parental | PLSVYRGFFGCRHFSKTNELLRKSGKKPIDWTKL |
.LSVYRGFFGC.HFSKTNELLRKSGKKPIDWT.L | |
Retrocopy | TLSVYRGFFGCGHFSKTNELLRKSGKKPIDWTEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .86 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016525 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011144 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010134 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000004634 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005335 | 2 retrocopies | |
Equus caballus | ENSECAG00000008080 | 1 retrocopy | |
Felis catus | ENSFCAG00000008349 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015792 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000010755 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000006957 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003463 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001442 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003145 | 1 retrocopy |
retro_ocun_1767 ,
|
Otolemur garnettii | ENSOGAG00000007441 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004929 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000005419 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009938 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006894 | 1 retrocopy |