Parental gene:

TMED2, ENSPPYG00000005090

Aliases:None
Description:transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:16996]
Organism:Orangutan (Pongo abelii)
Coordinates:12:125977351..125991818(+)


>ENSPPYG00000005090
ATGGTGACTCTTGCTGAACTGCTGGTGCTCCTGGCCGCTCTCCTGGCCACGGTCTCGGGCTATTTCGTTAGCATCGACGC
GCATGCTGAGGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCT
TCCTGGACATCGACGTGGAGATTACAGGACCAGATAACAAAGGAATTTACAAAGGAGACAGAGAATCCAGTGGGAAATAC
ACATTTGCTGCTCACATGGACGGAACATACAAATTTTGTTTTAGTAACCGGATGTCCACCATGACTCCAAAAATAGTGAT
GTTCACCATTGATATTGGGGAGGCTCCAAAAGGACAAGATATGGAAACAGAAGGTGGTGGAGATACCTGGGATGCTCACC
AGAACAAGCTAGAAGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAAAGCATGAACAGGAATACATGGAAGTC
CGGGAGAGGATACACAGAGCCATCAACGACAACACAAACAGCAGAGTGGTCCTTTGGTCCTTCTTTGAAGCTCTTGTTCT
AGTTGCCATGACATTGGGACAGATCTACTACCTGAAGAGATTTTTTGAAGTCCGGAGGGTTGTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 43 .73 RPM
SRP007412_cerebellum 43 .05 RPM
SRP007412_heart 45 .58 RPM
SRP007412_kidney 63 .44 RPM
SRP007412_liver 140 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015262 ortholog_one2one 2 retrogenes
retro_amel_1923, retro_amel_337,
Bos taurus ENSBTAG00000039630 ortholog_one2one 2 retrogenes
retro_btau_52, retro_btau_819,
Choloepus hoffmanni ENSCHOG00000012728 ortholog_one2one 6 retrogenes
retro_chof_104, retro_chof_1277, retro_chof_2323, retro_chof_2601, retro_chof_2709, retro_chof_981,
Callithrix jacchus ENSCJAG00000020466 ortholog_one2one 1 retrogene
retro_cjac_1392,
Echinops telfairi ENSETEG00000000556 ortholog_one2one 2 retrogenes
retro_etel_2109, retro_etel_2154,
Homo sapiens ENSG00000086598 ortholog_one2one 1 retrogene
retro_hsap_2793,
Gorilla gorilla ENSGGOG00000028536 ortholog_one2one 1 retrogene
retro_ggor_1943,
Macaca mulatta ENSMMUG00000031491 ortholog_one2one 2 retrogenes
retro_mmul_1439, retro_mmul_613,
Mustela putorius furo ENSMPUG00000001598 ortholog_one2one 1 retrogene
retro_mputfur_1241,
Mus musculus ENSMUSG00000029390 ortholog_one2one 2 retrogenes
retro_mmus_1361, retro_mmus_3262,
Nomascus leucogenys ENSNLEG00000001652 ortholog_one2one 2 retrogenes
retro_nleu_2454, retro_nleu_2794,
Otolemur garnettii ENSOGAG00000009192 ortholog_one2one 1 retrogene
retro_ogar_2548,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1919 82.19 72.14
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2. retro_pabe_2227 81.21 82.09
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3. retro_pabe_3597 83.66 76.12
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Download FASTA sequences of all ENSPPYG00000005090 retrocopies