Parental gene: | TMED2, ENSPPYG00000005090 |
| Aliases: | None |
| Description: | transmembrane emp24 domain trafficking protein 2 [Source:HGNC Symbol;Acc:16996] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:125977351..125991818(+) |
>ENSPPYG00000005090
ATGGTGACTCTTGCTGAACTGCTGGTGCTCCTGGCCGCTCTCCTGGCCACGGTCTCGGGCTATTTCGTTAGCATCGACGC
GCATGCTGAGGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCT
TCCTGGACATCGACGTGGAGATTACAGGACCAGATAACAAAGGAATTTACAAAGGAGACAGAGAATCCAGTGGGAAATAC
ACATTTGCTGCTCACATGGACGGAACATACAAATTTTGTTTTAGTAACCGGATGTCCACCATGACTCCAAAAATAGTGAT
GTTCACCATTGATATTGGGGAGGCTCCAAAAGGACAAGATATGGAAACAGAAGGTGGTGGAGATACCTGGGATGCTCACC
AGAACAAGCTAGAAGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAAAGCATGAACAGGAATACATGGAAGTC
CGGGAGAGGATACACAGAGCCATCAACGACAACACAAACAGCAGAGTGGTCCTTTGGTCCTTCTTTGAAGCTCTTGTTCT
AGTTGCCATGACATTGGGACAGATCTACTACCTGAAGAGATTTTTTGAAGTCCGGAGGGTTGTTTAA
ATGGTGACTCTTGCTGAACTGCTGGTGCTCCTGGCCGCTCTCCTGGCCACGGTCTCGGGCTATTTCGTTAGCATCGACGC
GCATGCTGAGGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCT
TCCTGGACATCGACGTGGAGATTACAGGACCAGATAACAAAGGAATTTACAAAGGAGACAGAGAATCCAGTGGGAAATAC
ACATTTGCTGCTCACATGGACGGAACATACAAATTTTGTTTTAGTAACCGGATGTCCACCATGACTCCAAAAATAGTGAT
GTTCACCATTGATATTGGGGAGGCTCCAAAAGGACAAGATATGGAAACAGAAGGTGGTGGAGATACCTGGGATGCTCACC
AGAACAAGCTAGAAGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAAAGCATGAACAGGAATACATGGAAGTC
CGGGAGAGGATACACAGAGCCATCAACGACAACACAAACAGCAGAGTGGTCCTTTGGTCCTTCTTTGAAGCTCTTGTTCT
AGTTGCCATGACATTGGGACAGATCTACTACCTGAAGAGATTTTTTGAAGTCCGGAGGGTTGTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 43 .73 RPM |
| SRP007412_cerebellum | 43 .05 RPM |
| SRP007412_heart | 45 .58 RPM |
| SRP007412_kidney | 63 .44 RPM |
| SRP007412_liver | 140 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015262 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000039630 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000012728 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020466 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000000556 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000086598 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000028536 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000031491 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000001598 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000029390 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001652 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009192 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1919 | 82.19 | 72.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2227 | 81.21 | 82.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3597 | 83.66 | 76.12 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005090 retrocopies