Parental gene:

RPL3L, ENSPPYG00000006973

Aliases:None
Description:ribosomal protein L3-like [Source:HGNC Symbol;Acc:10351]
Organism:Orangutan (Pongo abelii)
Coordinates:16:1999348..2011973(-)


>ENSPPYG00000006973
CAGTCCCACCGGAAGTTTTCCGCCCCTCGGCACGGACACCTGGGCTTTCTGCCCCATAAGAGGAGCCGCCGGCACCGGGG
CAAGGTGAAGACGTGGCCGCGGGATGACCCCAGCCAGCCCGTCCACCTCACAGCCTTCCTGGGCTACAAGGCGGGCATGA
CCCACACCCTGCGGGAGGTGCACCGGCCGGGGCTCAAAATTTCCAAACGGGAGGAGGTGGAGGCGGTGACAATTGTAGAA
ACGCCGCCCCTAGTGGTGGTGGGCGTGGTGGGCTATGTGGCCACCCCTCGAGGTCTCCGGAGCTTCAAGACCATCTTTGC
AGAACACCTCAGTGACGAGTGCCGGCGCCGATTCTACAAGGACTGGCACAAGAGCAAGAAGAAAGCCTTCAGCAAGGCCT
GTAAGAGGTGGCGGGACCCAGACGGCAAAAAGCAGCTGCAGAAAGACTTCGCCGCCATGAAGAAGTACTGCAAGGTCATT
CGCGTCATTGTCCACACTCAGATGAAACTGCTGCCCTTCCGGCAGAAGAAGGCCCACATCATGGAGATCCAGCTGAACGG
TGGCACGGTGGCCGAGAAGGTGGCCTGGGCCCAGGCCCGGCTGGAGAAGCAGGTGCCCGTGCACAGCGTGTTCAGCCAGA
GTGAGGTCATTGATGTCATTGCTGTCACCAAGGGTCGAGGCGTCAAAGGGGTCACAAGCCGCTGGCATACCAAGAAGCTG
CCGCGGAAGACCCATAAGGGCCTGCGCAAGGTGGCCTGCATTGGCGCCTGGCACCCCGCCCGCGTGGGCTGCTCCATTGC
TCGGGCCGGGCAGAAGGGCTATCACCACCGCACAGAGCTCAACAAGAAGATCTACCGCATTGGCAGGGGGCCGCACATGG
AGGACGGGAAGCTGGTGAAGAACAATGCATCTACCAGCTACGACGTGACTGCCAAGGCCATCACACCGCTGGGCGGCTTC
CCCCACTACGGGGAAGTGAACAACGACTTCGTCATGCTGAAGGGTTTGATCGCTGGTACCAAGAAGCGGGTCATTACGCT
GAGAAAAAGGTTGGCAGTGGCTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTCATTGACACCACCTCTAAGT
TCGGTCATGGCCGCTTCCAGACAGCCCAAGAGAAGAGGGCCTTCATGGGCCCCCAAAAGAAGCATCTGGAGAAGGAAAAG
CCGGAGACCTCGGGAGACTTG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .06 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 39 .53 RPM
SRP007412_kidney 0 .60 RPM
SRP007412_liver 0 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008489 ortholog_one2one 1 retrogene
retro_amel_1881,
Nomascus leucogenys ENSNLEG00000008850 ortholog_one2one 9 retrogenes
retro_nleu_1107, retro_nleu_1130, retro_nleu_1249, retro_nleu_1305, retro_nleu_1673, retro_nleu_1824, retro_nleu_2046, retro_nleu_2060, retro_nleu_3126,
Pongo abelii ENSPPYG00000011837 within_species_paralog 10 retrogenes
retro_pabe_1113, retro_pabe_1861, retro_pabe_2167, retro_pabe_2743, retro_pabe_2985, retro_pabe_3170, retro_pabe_3318, retro_pabe_3349, retro_pabe_3696, retro_pabe_3761,
Pan troglodytes ENSPTRG00000007617 ortholog_one2one 12 retrogenes
retro_ptro_1439, retro_ptro_1473, retro_ptro_1753, retro_ptro_2150, retro_ptro_2339, retro_ptro_2462, retro_ptro_2501, retro_ptro_2646, retro_ptro_2741, retro_ptro_2767, retro_ptro_3163, retro_ptro_916,
Ictidomys tridecemlineatus ENSSTOG00000012921 ortholog_one2one 2 retrogenes
retro_itri_1344, retro_itri_867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2854 71.90 96.56
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Download FASTA sequences of all ENSPPYG00000006973 retrocopies