RetrogeneDB - Parental gene ENSPPYG00000011837 details

							
>ENSPPYG00000011837
ATGTCTCACAGAAAGTTCTCCGCTCCCAGACATGGGTCTCTCGGCTTCCTGCCTCGGAAGCGCAGCAGCAGGCATCGTGG

GAAGGTGAAGAGCTTCCCTAAGGATGACCCGTCCAAGCCGGTCCACCTCACAGCCTTCCTGGGATACAAGGCTGGCATGA

CTCACATCGTGCGAGAAGTCGACAGGCCAGGATCCAAGGTGAACAAGAAGGAGGTGGTGGAGGCTGTGACCATTGTAGAG

ACACCACCCATGGTGGTTGTGGGCATTGTGGGCTACGTGGAAACCCCTCGAGGCCTCCGGACCTTCAAGACTGTCTTCGC

TGAGCACATCAGTGATGAATGCAAGAGGCGTTTCTATAAGAATTGGCATAAATCTAAGAAGAAGGCCTTTACCAAGTACT

GCAAGAAATGGCAGGATGAGGATGGCAAGAAGCAGCTGGAGAAGGACTTCAGCAGCATGAAGAAGTACTGCCAAGTCATC

CGTGTCATTGCCCACACCCAGATGCGCCTGCTTCCTCTGCGCCAGAAGAAGGCCCACCTGATGGAGATCCAGGTGAACGG

AGGCACCGTGGCTGAGAAGCTGGACTGGGCCCGCGAGAGGCTTGAGCAGCAGGTACCTGTGAACCAAGTGTTTGGGCAGG

ATGAGATGATCGACGTCATCGGGGTGACCAAGGGCAAAGGCTACAAAGGGGTCACCAGTCGTTGGCACACCAAGAAGCTG

CCCCGCAAGACCCACCGAGGCCTGCGCAAGGTGGCCTGTATTGGGGCATGGCATCCTGCTCGTGTAGCCTTCTCTGTGGC

ACGCGCTGGGCAGAAAGGCTACCATCACCGCACTGAGATCAACAAGAAGATCTATAAGATTGGCCAGGGCTACCTTATCA

AGGATGGCAAGCTGATCAAGAACAATGCCTCCACTGACTATGATCTATCTGACAAGAGCATCAATCCTCTGGGTGGCTTT

GTCCACTATGGTGAAGTGACCAATGACTTTGTCATGCTGAAAGGCTGTGTGGTGGGAACCAAGAAGCGGGTGCTCACCCT

CCGCAAGTCCTTGCTGGTGCAGACGAAGCGGCGGGCTCTGGAGAAGATTGACCTTAAGTTCATTGACACCACCTCCAAGT

TTGGCCATGGCCGCTTCCAGACCATGGAGGAGAAGAAAGCATTCATGGGACCACTCAAGAAAGACCGAATTGCAAAGGAA

GAAGGAGCTTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	169 .41 RPM
SRP007412_cerebellum	139 .11 RPM
SRP007412_heart	60 .51 RPM
SRP007412_kidney	379 .03 RPM
SRP007412_liver	256 .93 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000010853	ortholog_one2many	1 retrogene	retro_amel_1115,
Bos taurus	ENSBTAG00000003228	possible_ortholog	3 retrogenes	retro_btau_1644, retro_btau_281, retro_btau_341,
Canis familiaris	ENSCAFG00000001346	ortholog_many2many	1 retrogene	retro_cfam_97,
Callithrix jacchus	ENSCJAG00000016276	ortholog_one2one	6 retrogenes	retro_cjac_1198, retro_cjac_1972, retro_cjac_2157, retro_cjac_2264, retro_cjac_3079, retro_cjac_823,
Dasypus novemcinctus	ENSDNOG00000001121	ortholog_one2many	4 retrogenes	retro_dnov_1359, retro_dnov_1641, retro_dnov_652, retro_dnov_788,
Equus caballus	ENSECAG00000020665	possible_ortholog	1 retrogene	retro_ecab_897,
Erinaceus europaeus	ENSEEUG00000014661	ortholog_one2many	2 retrogenes	retro_eeur_488, retro_eeur_557,
Echinops telfairi	ENSETEG00000011380	ortholog_one2many	5 retrogenes	retro_etel_1646, retro_etel_2199, retro_etel_2212, retro_etel_657, retro_etel_972,
Felis catus	ENSFCAG00000005820	ortholog_one2many	1 retrogene	retro_fcat_1809,
Homo sapiens	ENSG00000100316	ortholog_one2one	9 retrogenes	retro_hsap_1341, retro_hsap_2403, retro_hsap_2529, retro_hsap_3328, retro_hsap_3448, retro_hsap_3638, retro_hsap_3889, retro_hsap_4081, retro_hsap_4749,
Gorilla gorilla	ENSGGOG00000002326	ortholog_one2one	10 retrogenes	retro_ggor_1043, retro_ggor_1295, retro_ggor_1582, retro_ggor_1822, retro_ggor_2329, retro_ggor_2616, retro_ggor_2713, retro_ggor_2736, retro_ggor_2955, retro_ggor_36,
Macropus eugenii	ENSMEUG00000009789	ortholog_one2many	26 retrogenes	retro_meug_1045, retro_meug_118, retro_meug_1210, retro_meug_1403, retro_meug_1452, retro_meug_1492, retro_meug_1516, retro_meug_1554, retro_meug_1589, retro_meug_1604, retro_meug_1698, retro_meug_1856, retro_meug_2150, retro_meug_2151, retro_meug_221, retro_meug_367, retro_meug_412, retro_meug_461, retro_meug_592, retro_meug_677, retro_meug_683, retro_meug_831, retro_meug_851, retro_meug_886, retro_meug_889, retro_meug_898,
Microcebus murinus	ENSMICG00000015832	ortholog_one2one	1 retrogene	retro_mmur_1307,
Myotis lucifugus	ENSMLUG00000023711	ortholog_one2many	1 retrogene	retro_mluc_810,
Monodelphis domestica	ENSMODG00000009539	ortholog_one2many	2 retrogenes	retro_mdom_380, retro_mdom_408,
Mustela putorius furo	ENSMPUG00000013271	ortholog_one2many	3 retrogenes	retro_mputfur_1284, retro_mputfur_199, retro_mputfur_774,
Mus musculus	ENSMUSG00000060036	possible_ortholog	30 retrogenes	retro_mmus_1148, retro_mmus_1158, retro_mmus_1164, retro_mmus_1165, retro_mmus_1167, retro_mmus_1183, retro_mmus_1238, retro_mmus_1239, retro_mmus_1240, retro_mmus_1241, retro_mmus_1242, retro_mmus_1243, retro_mmus_1244, retro_mmus_1245, retro_mmus_1246, retro_mmus_1465, retro_mmus_1548, retro_mmus_2231, retro_mmus_2275, retro_mmus_2276, retro_mmus_2474, retro_mmus_2501, retro_mmus_2547, retro_mmus_2849, retro_mmus_3125, retro_mmus_3215, retro_mmus_3422, retro_mmus_3467, retro_mmus_361, retro_mmus_897,
Nomascus leucogenys	ENSNLEG00000015234	possible_ortholog	2 retrogenes	retro_nleu_1038, retro_nleu_1449,
Oryctolagus cuniculus	ENSOCUG00000027712	possible_ortholog	4 retrogenes	retro_ocun_105, retro_ocun_179, retro_ocun_1893, retro_ocun_558,
Otolemur garnettii	ENSOGAG00000000032	possible_ortholog	7 retrogenes	retro_ogar_1264, retro_ogar_1679, retro_ogar_2096, retro_ogar_2122, retro_ogar_2448, retro_ogar_3431, retro_ogar_960,
Ochotona princeps	ENSOPRG00000013088	ortholog_one2many	3 retrogenes	retro_opri_1004, retro_opri_1014, retro_opri_432,
Procavia capensis	ENSPCAG00000010642	ortholog_one2many	1 retrogene	retro_pcap_115,
Pongo abelii	ENSPPYG00000006973	within_species_paralog	1 retrogene	retro_pabe_2854,
Pteropus vampyrus	ENSPVAG00000003204	ortholog_one2many	2 retrogenes	retro_pvam_1220, retro_pvam_1390,
Rattus norvegicus	ENSRNOG00000016896	possible_ortholog	2 retrogenes	retro_rnor_1333, retro_rnor_731,
Sarcophilus harrisii	ENSSHAG00000003212	ortholog_many2many	2 retrogenes	retro_shar_154, retro_shar_662,
Tupaia belangeri	ENSTBEG00000005989	ortholog_one2many	1 retrogene	retro_tbel_939,
Tursiops truncatus	ENSTTRG00000010880	possible_ortholog	2 retrogenes	retro_ttru_1266, retro_ttru_1518,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_1113	84.90	86.85	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_1861	81.44	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_2167	73.75	74.19	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_2743	86.10	64.27	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_2985	91.85	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_3170	74.45	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_3318	72.07	55.09	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_3349	85.03	97.77	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pabe_3696	84.93	90.07	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pabe_3761	82.27	69.73	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000011837 retrocopies

Parental gene:	RPL3, ENSPPYG00000011837
Aliases:	None
Description:	ribosomal protein L3 [Source:HGNC Symbol;Acc:10332]
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	22:34519460..34526264(-)

Parental gene:

RPL3, ENSPPYG00000011837